BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0160800 Os06g0160800|AK063063
         (125 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os06g0160800  Conserved hypothetical protein                      207   1e-54
Os06g0161200                                                       72   8e-14

>Os06g0160800 Conserved hypothetical protein
          Length = 125

 Score =  207 bits (527), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 105/125 (84%), Positives = 105/125 (84%)

Query: 1   MEEDEMRMREKLATMDERQAMAMRLTWISELVASNKKSIAGNKAYILALIDAIDNDRCPY 60
           MEEDEMRMREKLATMDERQAMAMRLTWISELVASNKKSIAGNKAYILALIDAIDNDRCPY
Sbjct: 1   MEEDEMRMREKLATMDERQAMAMRLTWISELVASNKKSIAGNKAYILALIDAIDNDRCPY 60

Query: 61  TAAELSDKIRELREDRVTVIKTMIDSVXXXXXXXXXXXXXXXXXXXXNSGAIGCGPTHQS 120
           TAAELSDKIRELREDRVTVIKTMIDSV                    NSGAIGCGPTHQS
Sbjct: 61  TAAELSDKIRELREDRVTVIKTMIDSVRAATPAAGGDGGTRRRGADDNSGAIGCGPTHQS 120

Query: 121 RTISR 125
           RTISR
Sbjct: 121 RTISR 125



>Os06g0161200 
          Length = 100

 Score = 72.4 bits (176), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 35/76 (46%), Positives = 54/76 (71%), Gaps = 5/76 (6%)

Query: 17 ERQAMAMRLTWISELVASNKKSIAGNKAYILALIDAIDNDRCPYTAAELSDKIRELREDR 76
          ER+A+A++L WIS+L+A  ++ IA N+ Y+  L+++ID+  CP+T AEL D+IR+LRE R
Sbjct: 6  EREAVAIQLGWISDLLADTERLIASNRGYVRDLLESIDDGTCPFTFAELQDEIRDLRESR 65

Query: 77 -----VTVIKTMIDSV 87
               +  IK M+D V
Sbjct: 66 AVDAALDGIKEMLDDV 81



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.317    0.128    0.354 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,928,253
Number of extensions: 73988
Number of successful extensions: 207
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 206
Number of HSP's successfully gapped: 2
Length of query: 125
Length of database: 17,035,801
Length adjustment: 88
Effective length of query: 37
Effective length of database: 12,440,969
Effective search space: 460315853
Effective search space used: 460315853
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 149 (62.0 bits)