BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0160600 Os06g0160600|Os06g0160600
         (468 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os06g0160600  Protein of unknown function DUF247, plant fami...   746   0.0  
Os08g0132500                                                      103   2e-22

>Os06g0160600 Protein of unknown function DUF247, plant family protein
          Length = 468

 Score =  746 bits (1927), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/468 (80%), Positives = 379/468 (80%)

Query: 1   MAAWTAAAGMLGSAAYTRMRAENPSEFMPRRVLLSHAGLENEIDRGNSFWVKAALVYESV 60
           MAAWTAAAGMLGSAAYTRMRAENPSEFMPRRVLLSHAGLENEIDRGNSFWVKAALVYESV
Sbjct: 1   MAAWTAAAGMLGSAAYTRMRAENPSEFMPRRVLLSHAGLENEIDRGNSFWVKAALVYESV 60

Query: 61  TGDHVDDHTRHLSRDLLLNLAAYCCPHVHPDPSPRRPQALSXXXXXXXXXXXQLAKRTQH 120
           TGDHVDDHTRHLSRDLLLNLAAYCCPHVHPDPSPRRPQALS           QLAKRTQH
Sbjct: 61  TGDHVDDHTRHLSRDLLLNLAAYCCPHVHPDPSPRRPQALSEDEDKKKAEDDQLAKRTQH 120

Query: 121 PDEGTEENKQVIDAIFLVVGFLPRLXXXXXXXXXXXXXXXXXRRDAVDESFKATHMQDIV 180
           PDEGTEENKQVIDAIFLVVGFLPRL                 RRDAVDESFKATHMQDIV
Sbjct: 121 PDEGTEENKQVIDAIFLVVGFLPRLTKAAATGGGKGAAAAAARRDAVDESFKATHMQDIV 180

Query: 181 TDVIKLENQLPIKXXXXXXXXXXXXXXXXXGDIPGLKDDVAKALREYKLGFARANFDGVI 240
           TDVIKLENQLPIK                 GDIPGLKDDVAKALREYKLGFARANFDGVI
Sbjct: 181 TDVIKLENQLPIKHLLAVADLAEAAVHAAAGDIPGLKDDVAKALREYKLGFARANFDGVI 240

Query: 241 RSFCSYYSPFFSKDEQAKKPDDAAISGELTLLDCLHASLVPPSSEXXXXXXXXXXXXTSR 300
           RSFCSYYSPFFSKDEQAKKPDDAAISGELTLLDCLHASLVPPSSE            TSR
Sbjct: 241 RSFCSYYSPFFSKDEQAKKPDDAAISGELTLLDCLHASLVPPSSEAGGGAGGVKGGKTSR 300

Query: 301 IPTAKELRRSGVRLEAGVEDGRAVVQFKEDAATLRLPALVFDFKLATVARNLLARELEEQ 360
           IPTAKELRRSGVRLEAGVEDGRAVVQFKEDAATLRLPALVFDFKLATVARNLLARELEEQ
Sbjct: 301 IPTAKELRRSGVRLEAGVEDGRAVVQFKEDAATLRLPALVFDFKLATVARNLLARELEEQ 360

Query: 361 SKPVTRYFQLMNELVEEVADVRILXXXXXXXXXXXXXXEVHELIKKIDGYATYPSVFMAM 420
           SKPVTRYFQLMNELVEEVADVRIL              EVHELIKKIDGYATYPSVFMAM
Sbjct: 361 SKPVTRYFQLMNELVEEVADVRILRRAGVVRGGSRGAGEVHELIKKIDGYATYPSVFMAM 420

Query: 421 DVQVEKVKVFHEKRMNNFFVRYRPXXXXXXXXXXXXXXXXXXTRKKRG 468
           DVQVEKVKVFHEKRMNNFFVRYRP                  TRKKRG
Sbjct: 421 DVQVEKVKVFHEKRMNNFFVRYRPAIVAASSVVAASVVAIVATRKKRG 468



>Os08g0132500 
          Length = 125

 Score =  103 bits (258), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 64/108 (59%), Positives = 68/108 (62%), Gaps = 14/108 (12%)

Query: 228 KLGFARANFDGVIRSFCSYYSPFFSK------------DEQAKKPDDAAISGELTLLDCL 275
           KLGF RA+FD VIRSFC YYS FFSK            DEQAKK   A IS ELTLLDCL
Sbjct: 12  KLGFQRADFDDVIRSFCWYYSSFFSKQAAATAVAPPKDDEQAKKTG-ATISYELTLLDCL 70

Query: 276 HASLVPPSSEXXXXXXXXXXXXTSRIPTAKELRRSGVRLEAGVEDGRA 323
           HASLVPPS              TSRI TA ELRRSG+RL A +E+G A
Sbjct: 71  HASLVPPSEGAATGGGGVKGGKTSRIRTANELRRSGIRLMA-MEEGCA 117



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.320    0.135    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,264,401
Number of extensions: 420493
Number of successful extensions: 886
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 884
Number of HSP's successfully gapped: 2
Length of query: 468
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 364
Effective length of database: 11,605,545
Effective search space: 4224418380
Effective search space used: 4224418380
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 158 (65.5 bits)