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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0160600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF247, plant family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.33 (0.0445) R2 : 0.809
β1 : -3.77 (0.168) R2dD : 0.249 R2D : -0.307
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.98 (0.137) R2dE : 0.119 R2E : -0.523
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -4.38 (0.104) R2dN8 : 1.27 R2N8 : 0.521
σ : 0.806
deviance : 299.64
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_____
C
peak time of C : --
E
wheather : temperature
threshold : 24.02
memory length : 2786
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
284.62 0.793 6.3 -3.64 0.709 1.82 -0.444 0.211 -4.37 7.24 23.95 2117 -- --
284.7 0.786 6.31 -3.7 0.714 1.82 -0.441 -- -4.38 7.25 23.9 2117 -- --
285.08 0.786 6.3 -3.62 0.71 1.8 -- 0.295 -4.36 7.07 23.95 2117 -- --
285.21 0.787 6.31 -3.72 0.716 1.82 -- -- -4.39 7.06 23.9 2117 -- --
299.7 0.806 6.31 -3.56 -- 1.95 -- 0.549 -4.31 -- 24.03 2777 -- --
417.76 0.958 6.16 -2.96 0.614 -- 0.283 -- -3.69 5.44 -- -- -- --
417.91 0.957 6.16 -2.95 0.617 -- -- -- -3.69 5.62 -- -- -- --
299.64 0.806 6.33 -3.77 -- 1.98 -- -- -4.38 -- 24.02 2786 -- --
612.61 1.15 6.11 -- 0.562 0.875 -- -- -3.49 6.98 26.82 2666 -- --
437.69 0.978 6.17 -2.93 -- -- -- -- -3.67 -- -- -- -- --
647.96 1.19 6.09 -- 0.571 -- -- -- -3.36 5.85 -- -- -- --
623.74 1.16 6.11 -- -- 0.897 -- -- -3.41 -- 28.72 2746 -- --
664.85 1.2 6.1 -- -- -- -- -- -3.35 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 280.67 radiation 1 43200 > th dose independent rect. 18 11
2 283.61 radiation 1 43200 > th dose independent rect. 18 1
12 285.71 temperature 30 1440 < th dose dependent rect. 6 2
13 285.95 temperature 20 1440 > th dose dependent rect. 6 2
16 286.69 temperature 30 1440 < th dose dependent rect. 5 4
17 286.75 temperature 15 1440 > th dose dependent rect. 5 4
21 286.95 radiation 1 43200 < th dose independent rect. 18 11
33 288.10 temperature 20 1440 > th dose dependent rect. 16 22
34 288.12 temperature 20 1440 > th dose dependent rect. 1 21
43 288.22 temperature 20 1440 > th dose dependent sin 4 NA
52 288.25 temperature 20 1440 > th dose dependent rect. 5 21
120 288.46 temperature 20 1440 > th dose dependent rect. 13 23
125 288.49 temperature 20 1440 > th dose dependent no NA NA
133 288.50 temperature 20 1440 > th dose dependent rect. 21 23
181 288.65 radiation 10 14400 < th dose dependent rect. 18 2
183 288.66 temperature 20 1440 > th dose dependent rect. 1 13
185 288.67 radiation 1 43200 < th dose independent rect. 18 8
191 288.69 radiation 1 43200 < th dose independent rect. 18 2
196 288.70 radiation 1 43200 < th dose independent rect. 18 5
321 289.05 radiation 10 14400 < th dose dependent rect. 18 5
497 289.65 temperature 30 1440 < th dose dependent rect. 4 19
528 289.79 radiation 10 14400 < th dose dependent rect. 18 11
543 289.87 temperature 30 4320 < th dose dependent rect. 21 2
558 289.91 temperature 10 4320 > th dose dependent rect. 21 2
657 290.22 temperature 10 4320 > th dose dependent rect. 17 6
765 290.55 temperature 30 1440 < th dose dependent rect. 16 22
811 290.68 temperature 30 4320 < th dose dependent rect. 17 17
898 290.92 temperature 30 4320 < th dose dependent rect. 17 6
912 290.95 temperature 15 4320 > th dose dependent rect. 17 2
951 291.03 temperature 20 1440 > th dose dependent sin 18 NA
976 291.08 temperature 15 4320 > th dose dependent sin 14 NA
977 291.08 temperature 30 1440 < th dose dependent sin 4 NA