BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0153900 Os06g0153900|AK101884
         (234 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os06g0153900  Similar to Thiol methyltransferase 2                466   e-132
Os03g0843800  Thiopurine S-methyltransferase family protein       120   1e-27

>Os06g0153900 Similar to Thiol methyltransferase 2
          Length = 234

 Score =  466 bits (1198), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 229/234 (97%), Positives = 229/234 (97%)

Query: 1   MSSSAARVXXXXXRDPSNNPAVGRLRELVQRGDAADGWEKSWEAAVTPWDLGKPTPIIEH 60
           MSSSAARV     RDPSNNPAVGRLRELVQRGDAADGWEKSWEAAVTPWDLGKPTPIIEH
Sbjct: 1   MSSSAARVGGGGGRDPSNNPAVGRLRELVQRGDAADGWEKSWEAAVTPWDLGKPTPIIEH 60

Query: 61  LVKSGTLPKGRALVPGCGTGYDVVALASPERFVVGLDISSTAVEKAKQWSSSLPNADCFT 120
           LVKSGTLPKGRALVPGCGTGYDVVALASPERFVVGLDISSTAVEKAKQWSSSLPNADCFT
Sbjct: 61  LVKSGTLPKGRALVPGCGTGYDVVALASPERFVVGLDISSTAVEKAKQWSSSLPNADCFT 120

Query: 121 FLADDFFKWKPSEQFDLIFDYTFFCALDPSLRLAWAETVSGLLKPHGELITLIYLISDQE 180
           FLADDFFKWKPSEQFDLIFDYTFFCALDPSLRLAWAETVSGLLKPHGELITLIYLISDQE
Sbjct: 121 FLADDFFKWKPSEQFDLIFDYTFFCALDPSLRLAWAETVSGLLKPHGELITLIYLISDQE 180

Query: 181 GGPPFNNTVTDYQKVLEPLGFKAILMEDNELAIKPRKGQEKLGRWKRFVPGSSL 234
           GGPPFNNTVTDYQKVLEPLGFKAILMEDNELAIKPRKGQEKLGRWKRFVPGSSL
Sbjct: 181 GGPPFNNTVTDYQKVLEPLGFKAILMEDNELAIKPRKGQEKLGRWKRFVPGSSL 234



>Os03g0843800 Thiopurine S-methyltransferase family protein
          Length = 102

 Score =  120 bits (300), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 54/93 (58%), Positives = 69/93 (74%)

Query: 137 LIFDYTFFCALDPSLRLAWAETVSGLLKPHGELITLIYLISDQEGGPPFNNTVTDYQKVL 196
            I ++ FFCAL PS+R AWA+ ++ LL+P GELITL+YL   QE GPPFN TV DY++VL
Sbjct: 7   FIKNFRFFCALHPSMRPAWAKRMADLLRPDGELITLMYLAEGQEAGPPFNTTVLDYKEVL 66

Query: 197 EPLGFKAILMEDNELAIKPRKGQEKLGRWKRFV 229
            PLG     +EDNE+A++PRKG EK+ RWKR  
Sbjct: 67  NPLGLVITSIEDNEVAVEPRKGMEKIARWKRMT 99



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.318    0.136    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,247,031
Number of extensions: 414355
Number of successful extensions: 865
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 865
Number of HSP's successfully gapped: 2
Length of query: 234
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 136
Effective length of database: 11,918,829
Effective search space: 1620960744
Effective search space used: 1620960744
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 154 (63.9 bits)