Os06g0153900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Thiol methyltransferase 2.
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Os06g0153900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Thiol methyltransferase 2.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 66.22 | 0.382 | 10.2 | -1.19 | 1.19 | 0.614 | -0.147 | 0.234 | 0.0514 | 2.99 | 21.9 | 729 | -- | -- |
| 66.4 | 0.38 | 10.2 | -1.27 | 1.18 | 0.616 | -0.133 | -- | 0.0333 | 3 | 21.9 | 737 | -- | -- |
| 66.29 | 0.379 | 10.2 | -1.19 | 1.18 | 0.615 | -- | 0.229 | 0.0516 | 2.98 | 21.93 | 732 | -- | -- |
| 66.46 | 0.38 | 10.2 | -1.26 | 1.18 | 0.612 | -- | -- | 0.0355 | 2.98 | 21.9 | 737 | -- | -- |
| 133.74 | 0.539 | 10.3 | -1.28 | -- | 1.01 | -- | 0.0297 | -0.11 | -- | 24.7 | 1063 | -- | -- |
| 81.96 | 0.424 | 10.2 | -1.06 | 1.21 | -- | -0.139 | -- | 0.228 | 2.61 | -- | -- | -- | -- |
| 82.03 | 0.424 | 10.2 | -1.05 | 1.21 | -- | -- | -- | 0.229 | 2.6 | -- | -- | -- | -- |
| 133.5 | 0.538 | 10.3 | -1.32 | -- | 0.965 | -- | -- | -0.0952 | -- | 24.7 | 1072 | -- | -- |
| 104.84 | 0.477 | 10.2 | -- | 1.21 | 0.361 | -- | -- | 0.235 | 2.77 | 22.3 | 561 | -- | -- |
| 167.38 | 0.605 | 10.2 | -1 | -- | -- | -- | -- | 0.259 | -- | -- | -- | -- | -- |
| 111.28 | 0.493 | 10.2 | -- | 1.19 | -- | -- | -- | 0.346 | 2.59 | -- | -- | -- | -- |
| 175.94 | 0.618 | 10.2 | -- | -- | 0.687 | -- | -- | 0.149 | -- | 24.93 | 1082 | -- | -- |
| 193.87 | 0.65 | 10.2 | -- | -- | -- | -- | -- | 0.37 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 64.13 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 6 |
| 8 | 65.56 | temperature | 10 | 720 | > th | dose dependent | rect. | 17 | 18 |
| 15 | 66.21 | temperature | 15 | 720 | > th | dose dependent | rect. | 17 | 14 |
| 16 | 66.22 | temperature | 15 | 720 | > th | dose dependent | sin | 11 | NA |
| 24 | 66.39 | temperature | 30 | 720 | < th | dose dependent | rect. | 20 | 12 |
| 38 | 66.64 | temperature | 25 | 720 | < th | dose dependent | rect. | 17 | 17 |
| 66 | 66.83 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 10 |
| 71 | 66.86 | temperature | 25 | 720 | < th | dose dependent | sin | 11 | NA |
| 159 | 67.29 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 6 |
| 213 | 67.50 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 3 |
| 215 | 67.50 | temperature | 25 | 720 | < th | dose dependent | rect. | 1 | 23 |
| 223 | 67.53 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 224 | 67.53 | temperature | 25 | 720 | < th | dose dependent | rect. | 9 | 23 |
| 279 | 67.82 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 327 | 68.05 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 362 | 68.22 | temperature | 25 | 720 | < th | dose dependent | rect. | 21 | 6 |
| 377 | 68.26 | temperature | 20 | 720 | > th | dose independent | rect. | 17 | 18 |
| 420 | 68.45 | temperature | 30 | 1440 | < th | dose dependent | rect. | 3 | 2 |
| 428 | 68.47 | temperature | 20 | 720 | > th | dose independent | rect. | 17 | 14 |
| 463 | 68.54 | temperature | 20 | 720 | > th | dose independent | sin | 10 | NA |
| 488 | 68.59 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 6 |
| 561 | 68.69 | temperature | 30 | 1440 | < th | dose dependent | rect. | 23 | 2 |
| 618 | 68.74 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 13 |