BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0150500 Os06g0150500|AK106314
         (467 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os06g0150500  Conserved hypothetical protein                      477   e-135

>Os06g0150500 Conserved hypothetical protein
          Length = 467

 Score =  477 bits (1228), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 306/467 (65%), Positives = 306/467 (65%)

Query: 1   MGAGGVSEPXXXXXXXXXXXXXXGGLHHLQQPRPQPRAGEEPXXXXXXXXXXXXXXXXQP 60
           MGAGGVSEP              GGLHHLQQPRPQPRAGEEP                QP
Sbjct: 1   MGAGGVSEPQARRRRRLQQAIRAGGLHHLQQPRPQPRAGEEPRPVAGRAGHHRRRCRPQP 60

Query: 61  AVLQPRHDQPRLAEPHVAVDGEREQAGDHHRRAPEAEVHRLRPLPAVLERRRLLRLHPVH 120
           AVLQPRHDQPRLAEPHVAVDGEREQAGDHHRRAPEAEVHRLRPLPAVLERRRLLRLHPVH
Sbjct: 61  AVLQPRHDQPRLAEPHVAVDGEREQAGDHHRRAPEAEVHRLRPLPAVLERRRLLRLHPVH 120

Query: 121 QLLEPVPGXXXXXXXXXXXXXGVQRRAEHLLHARLAXXXXXXXXXXXXQXXXXXXXXXXX 180
           QLLEPVPG             GVQRRAEHLLHARLA            Q           
Sbjct: 121 QLLEPVPGHRRRDRRAHHARHGVQRRAEHLLHARLAGGVGHHVPHVPVQRAALAAAHRRR 180

Query: 181 XXXXXXVDDPRHPAVGVGVADGTGEELPHVXXXXXXXXXXXXXXXXXXXXXXXTLEVGGL 240
                 VDDPRHPAVGVGVADGTGEELPHV                       TLEVGGL
Sbjct: 181 LEPLPAVDDPRHPAVGVGVADGTGEELPHVRAERHEAGGAPAAAAAGRRLLPETLEVGGL 240

Query: 241 DAVQAPLDGRRHEGIDHGGRREPRELLVQXXXXXXXXXXHEQGSIEQRLAGEPPLSDHLP 300
           DAVQAPLDGRRHEGIDHGGRREPRELLVQ          HEQGSIEQRLAGEPPLSDHLP
Sbjct: 241 DAVQAPLDGRRHEGIDHGGRREPRELLVQRRAEPRRRPRHEQGSIEQRLAGEPPLSDHLP 300

Query: 301 QGVEQHDERPPVGEEVIRRHRQREPAAREPDQLQRQREARVERHAHQPDRAVDLREVNGR 360
           QGVEQHDERPPVGEEVIRRHRQREPAAREPDQLQRQREARVERHAHQPDRAVDLREVNGR
Sbjct: 301 QGVEQHDERPPVGEEVIRRHRQREPAAREPDQLQRQREARVERHAHQPDRAVDLREVNGR 360

Query: 361 EGHGGVGHDELGTGVVAGDLGDVRRRVPHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 420
           EGHGGVGHDELGTGVVAGDLGDVRRRVPH                               
Sbjct: 361 EGHGGVGHDELGTGVVAGDLGDVRRRVPHDAAGEGEEVGEVRRERGADGGHHGGDAARRG 420

Query: 421 SXXXXXXXXXXXXXXXXXXXXXXXXXAWRRARRPDKLPGGDLEVEAP 467
           S                         AWRRARRPDKLPGGDLEVEAP
Sbjct: 421 SVDGDEVDGEGAEDEVKVGDGEDGREAWRRARRPDKLPGGDLEVEAP 467



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.316    0.139    0.422 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,929,852
Number of extensions: 569794
Number of successful extensions: 1876
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1871
Number of HSP's successfully gapped: 1
Length of query: 467
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 363
Effective length of database: 11,605,545
Effective search space: 4212812835
Effective search space used: 4212812835
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 158 (65.5 bits)