BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0150200 Os06g0150200|AK072773
         (220 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os06g0150200  Conserved hypothetical protein                      297   3e-81

>Os06g0150200 Conserved hypothetical protein
          Length = 220

 Score =  297 bits (761), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 154/202 (76%), Positives = 154/202 (76%)

Query: 1   MARWPPPSPPDGEHSFGHEAIALSFFVACVAATVVMASSMCSACGRKPKXXXXXXXXXXX 60
           MARWPPPSPPDGEHSFGHEAIALSFFVACVAATVVMASSMCSACGRKPK           
Sbjct: 1   MARWPPPSPPDGEHSFGHEAIALSFFVACVAATVVMASSMCSACGRKPKADDPAPDAAAA 60

Query: 61  XXVNAESHGDXXXXXXXXXKAPVVTLSPELATHGPIAGVAPPPSAAAKRRMSMTMSLSKN 120
             VNAESHGD         KAPVVTLSPELATHGPIAGVAPPPSAAAKRRMSMTMSLSKN
Sbjct: 61  ADVNAESHGDGGEEGEEEEKAPVVTLSPELATHGPIAGVAPPPSAAAKRRMSMTMSLSKN 120

Query: 121 LSMNIPDKMRLSRRERRDKVEPEDTLWKKAIILGEKCKIPGEREGEXXXXXXXXXXGXXX 180
           LSMNIPDKMRLSRRERRDKVEPEDTLWKKAIILGEKCKIPGEREGE          G   
Sbjct: 121 LSMNIPDKMRLSRRERRDKVEPEDTLWKKAIILGEKCKIPGEREGEADADADDLAAGSFR 180

Query: 181 XXXXXXXXXXXXXLAVHQSHVD 202
                        LAVHQSHVD
Sbjct: 181 RSSYSRPMSRSISLAVHQSHVD 202



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.316    0.129    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,218,572
Number of extensions: 206256
Number of successful extensions: 1142
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1141
Number of HSP's successfully gapped: 1
Length of query: 220
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 123
Effective length of database: 11,971,043
Effective search space: 1472438289
Effective search space used: 1472438289
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 154 (63.9 bits)