BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0136700 Os06g0136700|AK065081
         (809 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os06g0136700  Steroid nuclear receptor, ligand-binding domai...  1477   0.0  

>Os06g0136700 Steroid nuclear receptor, ligand-binding domain containing protein
          Length = 809

 Score = 1477 bits (3824), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 733/809 (90%), Positives = 733/809 (90%)

Query: 1   MASLLLEQQEKLRRHVDEWRFRCRAAVAEIGPXXXXXXXXXXXXXXXXXPTDPGVGVGXX 60
           MASLLLEQQEKLRRHVDEWRFRCRAAVAEIGP                 PTDPGVGVG  
Sbjct: 1   MASLLLEQQEKLRRHVDEWRFRCRAAVAEIGPRSASTSVSSASVRLRVAPTDPGVGVGAA 60

Query: 61  XXXXXXXXXEDNVDVSKFVAVLSHSCLEISRLSDAASSNLYRQLLLFGHTAEGPNEALLE 120
                    EDNVDVSKFVAVLSHSCLEISRLSDAASSNLYRQLLLFGHTAEGPNEALLE
Sbjct: 61  SLLTAAAAAEDNVDVSKFVAVLSHSCLEISRLSDAASSNLYRQLLLFGHTAEGPNEALLE 120

Query: 121 GEPQKTFAHSIPLLLEVYEIINGLVMILGNLLRQLDAICSVRDKNVRPLNSFKGLDLTTV 180
           GEPQKTFAHSIPLLLEVYEIINGLVMILGNLLRQLDAICSVRDKNVRPLNSFKGLDLTTV
Sbjct: 121 GEPQKTFAHSIPLLLEVYEIINGLVMILGNLLRQLDAICSVRDKNVRPLNSFKGLDLTTV 180

Query: 181 FGSLGEGLMVFLLVDEILRHNGNTRSYLSLFSRMLDKVKSEVDVFSMSFEDVDFLDQVVH 240
           FGSLGEGLMVFLLVDEILRHNGNTRSYLSLFSRMLDKVKSEVDVFSMSFEDVDFLDQVVH
Sbjct: 181 FGSLGEGLMVFLLVDEILRHNGNTRSYLSLFSRMLDKVKSEVDVFSMSFEDVDFLDQVVH 240

Query: 241 NLQKLFDIGFFQRLVQEDSPLCSSITLVRSNKKLLDTFYXXXXXXXXXXXQRIGSLKELP 300
           NLQKLFDIGFFQRLVQEDSPLCSSITLVRSNKKLLDTFY           QRIGSLKELP
Sbjct: 241 NLQKLFDIGFFQRLVQEDSPLCSSITLVRSNKKLLDTFYSFFSESSSEIIQRIGSLKELP 300

Query: 301 IDRRTILHXXXXXXXXXXXXXEAPDKKSMNLLVEIFQLVPVVYVEGGKRIVLSDLIRFHC 360
           IDRRTILH             EAPDKKSMNLLVEIFQLVPVVYVEGGKRIVLSDLIRFHC
Sbjct: 301 IDRRTILHLLGLFLFFTTTTGEAPDKKSMNLLVEIFQLVPVVYVEGGKRIVLSDLIRFHC 360

Query: 361 SPSLSLLPPIKEACEAFGIMKNSYLARLNEMHSRDIQAINDSLSCWSVSFQSAIHPSSQM 420
           SPSLSLLPPIKEACEAFGIMKNSYLARLNEMHSRDIQAINDSLSCWSVSFQSAIHPSSQM
Sbjct: 361 SPSLSLLPPIKEACEAFGIMKNSYLARLNEMHSRDIQAINDSLSCWSVSFQSAIHPSSQM 420

Query: 421 LTEEWVRHLQKQILQGVVLADRIHMLVLSMLDLHMHLEVPLRREKAKSLCQMIVSLKAIG 480
           LTEEWVRHLQKQILQGVVLADRIHMLVLSMLDLHMHLEVPLRREKAKSLCQMIVSLKAIG
Sbjct: 421 LTEEWVRHLQKQILQGVVLADRIHMLVLSMLDLHMHLEVPLRREKAKSLCQMIVSLKAIG 480

Query: 481 DLFHMKGSSLVRSLPHIINIIQSDIEQLIISLKTKLQNEIAKGSQAVKTGFLSSLIRGGT 540
           DLFHMKGSSLVRSLPHIINIIQSDIEQLIISLKTKLQNEIAKGSQAVKTGFLSSLIRGGT
Sbjct: 481 DLFHMKGSSLVRSLPHIINIIQSDIEQLIISLKTKLQNEIAKGSQAVKTGFLSSLIRGGT 540

Query: 541 DTETRLIDXXXXXXXXXXXXEGGGSSQRQLTLSITMDILHSLGYLDIELVGVRKLISKFS 600
           DTETRLID            EGGGSSQRQLTLSITMDILHSLGYLDIELVGVRKLISKFS
Sbjct: 541 DTETRLIDSLSLVLMSLQLLEGGGSSQRQLTLSITMDILHSLGYLDIELVGVRKLISKFS 600

Query: 601 ILSNFWSLIDERTNCSFLYWRKEMLVTWLSMVYGDACKLSWLQNIIDAFSDGMSXXXXXX 660
           ILSNFWSLIDERTNCSFLYWRKEMLVTWLSMVYGDACKLSWLQNIIDAFSDGMS      
Sbjct: 601 ILSNFWSLIDERTNCSFLYWRKEMLVTWLSMVYGDACKLSWLQNIIDAFSDGMSLLTLGN 660

Query: 661 XXXXXXQHYEEEIENALRKEVVAPLCRDIETDLRLHVHSTHLKGSVFVNPTKTGVRNLSW 720
                 QHYEEEIENALRKEVVAPLCRDIETDLRLHVHSTHLKGSVFVNPTKTGVRNLSW
Sbjct: 661 VGTVTLQHYEEEIENALRKEVVAPLCRDIETDLRLHVHSTHLKGSVFVNPTKTGVRNLSW 720

Query: 721 YLRMKPLRLPSKFVDIKFLVENHLNSAFYTYSVMSNYDNRVRSYAPYFSCIDKNCMKLKY 780
           YLRMKPLRLPSKFVDIKFLVENHLNSAFYTYSVMSNYDNRVRSYAPYFSCIDKNCMKLKY
Sbjct: 721 YLRMKPLRLPSKFVDIKFLVENHLNSAFYTYSVMSNYDNRVRSYAPYFSCIDKNCMKLKY 780

Query: 781 ISKYFLMTGVEYILDVCRDASTRRAEIWC 809
           ISKYFLMTGVEYILDVCRDASTRRAEIWC
Sbjct: 781 ISKYFLMTGVEYILDVCRDASTRRAEIWC 809



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.323    0.138    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 22,694,392
Number of extensions: 826497
Number of successful extensions: 1555
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1554
Number of HSP's successfully gapped: 1
Length of query: 809
Length of database: 17,035,801
Length adjustment: 109
Effective length of query: 700
Effective length of database: 11,344,475
Effective search space: 7941132500
Effective search space used: 7941132500
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 160 (66.2 bits)