Os06g0136700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Steroid nuclear receptor, ligand-binding domain containing protein.
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Os06g0136700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Steroid nuclear receptor, ligand-binding domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 75.23 | 0.408 | 7.81 | -0.681 | 0.289 | -0.51 | 0.378 | -1.83 | 0.338 | 3.45 | 68.48 | 5407 | -- | -- |
| 78.85 | 0.414 | 7.83 | -0.588 | 0.307 | -0.582 | 0.29 | -- | 0.276 | 3.49 | 67.63 | 3998 | -- | -- |
| 75.6 | 0.405 | 7.82 | -0.684 | 0.289 | -0.518 | -- | -1.79 | 0.337 | 3 | 68.7 | 5398 | -- | -- |
| 78.95 | 0.414 | 7.84 | -0.603 | 0.301 | -0.605 | -- | -- | 0.269 | 2.9 | 68 | 3998 | -- | -- |
| 79.21 | 0.415 | 7.83 | -0.634 | -- | -0.511 | -- | -1.51 | 0.31 | -- | 67.96 | 4747 | -- | -- |
| 85.36 | 0.433 | 7.82 | -0.603 | 0.25 | -- | 0.423 | -- | 0.323 | 4.35 | -- | -- | -- | -- |
| 85.7 | 0.434 | 7.82 | -0.607 | 0.254 | -- | -- | -- | 0.32 | 3.58 | -- | -- | -- | -- |
| 81.89 | 0.421 | 7.83 | -0.559 | -- | -0.524 | -- | -- | 0.322 | -- | 68 | 3262 | -- | -- |
| 87.39 | 0.435 | 7.82 | -- | 0.309 | -0.509 | -- | -- | 0.344 | 2.83 | 67.14 | 2623 | -- | -- |
| 89.28 | 0.442 | 7.82 | -0.596 | -- | -- | -- | -- | 0.327 | -- | -- | -- | -- | -- |
| 95.41 | 0.457 | 7.81 | -- | 0.242 | -- | -- | -- | 0.388 | 3.59 | -- | -- | -- | -- |
| 89.93 | 0.442 | 7.81 | -- | -- | -0.561 | -- | -- | 0.382 | -- | 68.01 | 1840 | -- | -- |
| 98.67 | 0.464 | 7.81 | -- | -- | -- | -- | -- | 0.393 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 66.64 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 2 | 67.33 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 3 | 67.33 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 4 | 67.69 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 5 | 70.54 | temperature | 25.0 | 90 | < th | dose independent | rect. | 1 | 17 |
| 6 | 70.58 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 1 | 17 |
| 7 | 70.62 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 1 | 20 |
| 8 | 70.72 | wind | 9.0 | 14400 | < th | dose independent | rect. | 4 | 9 |
| 10 | 70.77 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 3 | 15 |
| 12 | 70.84 | wind | 9.0 | 14400 | < th | dose independent | rect. | 2 | 11 |
| 15 | 70.87 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 1 | 17 |
| 16 | 70.93 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 4 | 4 |
| 18 | 70.93 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 4 | 4 |
| 24 | 71.04 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 5 | 3 |
| 26 | 71.05 | wind | 9.0 | 14400 | > th | dose independent | rect. | 6 | 5 |
| 29 | 71.18 | wind | 9.0 | 14400 | < th | dose independent | rect. | 6 | 5 |
| 30 | 71.22 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 5 | 3 |
| 33 | 71.24 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 20 | 15 |
| 40 | 71.30 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 41 | 71.30 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 5 | 1 |
| 42 | 71.33 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 14 | 2 |
| 43 | 71.33 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 14 | 2 |
| 46 | 71.37 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 52 | 71.40 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 4 | 12 |
| 57 | 71.46 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 5 | 8 |
| 61 | 71.48 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 4 | 12 |
| 62 | 71.48 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 4 | 12 |
| 65 | 71.50 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 70 | 71.54 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 14 | 2 |
| 71 | 71.54 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 14 | 2 |
| 74 | 71.56 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 4 | 12 |
| 96 | 71.78 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 4 | 6 |
| 103 | 71.85 | wind | 9.0 | 14400 | > th | dose independent | rect. | 4 | 9 |
| 105 | 71.87 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 4 | 6 |
| 106 | 71.87 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 4 | 6 |
| 120 | 71.98 | wind | 5.0 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 132 | 72.05 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 4 | 6 |
| 133 | 72.06 | wind | 9.0 | 14400 | > th | dose independent | rect. | 1 | 12 |
| 144 | 72.11 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 1 | 12 |
| 153 | 72.15 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 155 | 72.17 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 163 | 72.22 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 7 | 5 |
| 164 | 72.22 | wind | 7.0 | 14400 | > th | dose dependent | rect. | 12 | 1 |
| 179 | 72.33 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 1 | 1 |
| 183 | 72.34 | wind | 9.0 | 14400 | < th | dose independent | rect. | 10 | 3 |
| 185 | 72.34 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 10 | 3 |
| 196 | 72.39 | wind | 9.0 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 197 | 72.39 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 7 | 5 |
| 198 | 72.39 | radiation | 10.0 | 14400 | < th | dose dependent | rect. | 20 | 7 |
| 199 | 72.40 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 244 | 72.58 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 24 | 6 |
| 250 | 72.63 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 263 | 72.69 | wind | 3.0 | 14400 | < th | dose independent | rect. | 23 | 7 |
| 294 | 72.76 | wind | 3.0 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 295 | 72.76 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 296 | 72.76 | wind | 3.0 | 14400 | < th | dose independent | rect. | 1 | 5 |
| 306 | 72.80 | wind | 3.0 | 14400 | > th | dose independent | rect. | 1 | 5 |
| 312 | 72.84 | wind | 3.0 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 324 | 72.88 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 16 | 1 |
| 330 | 72.89 | wind | 3.0 | 14400 | > th | dose independent | rect. | 23 | 7 |
| 333 | 72.89 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 7 | 5 |
| 336 | 72.91 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 338 | 72.92 | wind | 3.0 | 14400 | < th | dose independent | rect. | 1 | 3 |
| 339 | 72.92 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 349 | 72.97 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 4 | 3 |
| 351 | 72.98 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 361 | 73.00 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 1 | 10 |
| 371 | 73.05 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 1 | 5 |
| 384 | 73.09 | wind | 3.0 | 14400 | > th | dose independent | rect. | 1 | 3 |
| 386 | 73.09 | temperature | 25.0 | 10 | < th | dose dependent | sin | 0 | NA |
| 429 | 73.21 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 7 | 10 |
| 471 | 73.32 | temperature | 30.0 | 10 | < th | dose dependent | sin | 4 | NA |
| 474 | 73.32 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 23 | 13 |
| 494 | 73.37 | precipitation | 0.1 | 14400 | > th | dose independent | sin | 3 | NA |
| 518 | 73.40 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 531 | 73.42 | precipitation | 0.1 | 14400 | < th | dose independent | sin | 3 | NA |
| 534 | 73.42 | precipitation | 0.1 | 14400 | < th | dose dependent | sin | 3 | NA |
| 548 | 73.44 | temperature | 20.0 | 270 | > th | dose independent | rect. | 19 | 16 |
| 555 | 73.45 | wind | 7.0 | 14400 | < th | dose dependent | rect. | 1 | 5 |
| 579 | 73.49 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 4 | 8 |
| 581 | 73.50 | wind | 3.0 | 14400 | > th | dose independent | rect. | 1 | 1 |
| 587 | 73.51 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 589 | 73.51 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 608 | 73.55 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 609 | 73.55 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 9 | 2 |
| 614 | 73.55 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 7 | 1 |
| 627 | 73.57 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 7 | 7 |
| 628 | 73.58 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 3 | 1 |
| 629 | 73.58 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 9 | 7 |
| 642 | 73.60 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 21 | 15 |
| 687 | 73.68 | wind | 3.0 | 14400 | < th | dose independent | rect. | 1 | 1 |
| 692 | 73.68 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 9 | 1 |
| 707 | 73.71 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 23 | 8 |
| 718 | 73.73 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 3 | 1 |
| 726 | 73.74 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 7 | 9 |
| 729 | 73.75 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 9 | 2 |
| 761 | 73.79 | temperature | 10.0 | 10 | > th | dose dependent | sin | 5 | NA |
| 793 | 73.85 | temperature | 25.0 | 90 | < th | dose independent | sin | 4 | NA |
| 814 | 73.89 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 1 | 16 |
| 816 | 73.90 | wind | 9.0 | 14400 | < th | dose independent | rect. | 12 | 1 |
| 847 | 73.96 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 9 | 7 |
| 848 | 73.96 | temperature | 20.0 | 270 | > th | dose independent | rect. | 4 | 8 |
| 851 | 73.96 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 9 | 7 |
| 923 | 74.07 | temperature | 20.0 | 270 | > th | dose independent | rect. | 5 | 19 |
| 957 | 74.12 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 9 | 5 |
| 973 | 74.13 | radiation | 10.0 | 14400 | < th | dose dependent | rect. | 22 | 5 |
| 975 | 74.14 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 984 | 74.15 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 6 | 1 |