BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0133800 Os06g0133800|AK067452
(678 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0133800 Similar to Transferase 1406 0.0
Os04g0266900 Bacterial transketolase family protein 1173 0.0
AK110336 970 0.0
>Os06g0133800 Similar to Transferase
Length = 678
Score = 1406 bits (3640), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 678/678 (100%), Positives = 678/678 (100%)
Query: 1 VRAAAVETLEGQAATGALLEKSVNTIRFLAIDAVEKANSGHPGLPMGCAPMGHILYDEVM 60
VRAAAVETLEGQAATGALLEKSVNTIRFLAIDAVEKANSGHPGLPMGCAPMGHILYDEVM
Sbjct: 1 VRAAAVETLEGQAATGALLEKSVNTIRFLAIDAVEKANSGHPGLPMGCAPMGHILYDEVM 60
Query: 61 RYNPKNPYWFNRDRFILSAGHGCMLQYALLHLAGYDAVLEEDLKQFRQWGSKTPGHPENF 120
RYNPKNPYWFNRDRFILSAGHGCMLQYALLHLAGYDAVLEEDLKQFRQWGSKTPGHPENF
Sbjct: 61 RYNPKNPYWFNRDRFILSAGHGCMLQYALLHLAGYDAVLEEDLKQFRQWGSKTPGHPENF 120
Query: 121 ETPGVEVTTGPLGQGIANAVGLALAEKHLAARFNKPDSEIVDHYTYCILGDGCQMEGISN 180
ETPGVEVTTGPLGQGIANAVGLALAEKHLAARFNKPDSEIVDHYTYCILGDGCQMEGISN
Sbjct: 121 ETPGVEVTTGPLGQGIANAVGLALAEKHLAARFNKPDSEIVDHYTYCILGDGCQMEGISN 180
Query: 181 EACSLAGHWGLGKLIAFYDDNHISIDGDTEIAFTEDVSARFEALGWHTIWVKNGNDGYDE 240
EACSLAGHWGLGKLIAFYDDNHISIDGDTEIAFTEDVSARFEALGWHTIWVKNGNDGYDE
Sbjct: 181 EACSLAGHWGLGKLIAFYDDNHISIDGDTEIAFTEDVSARFEALGWHTIWVKNGNDGYDE 240
Query: 241 IRAAIKEAKAVTDKPTLIKVTTTIGFGSPNKANSYSVHGSALGTKEVEATRENLGWPYEP 300
IRAAIKEAKAVTDKPTLIKVTTTIGFGSPNKANSYSVHGSALGTKEVEATRENLGWPYEP
Sbjct: 241 IRAAIKEAKAVTDKPTLIKVTTTIGFGSPNKANSYSVHGSALGTKEVEATRENLGWPYEP 300
Query: 301 FFVPEDVKSHWSRHVPQGAAFEADWNAKFAEYEKKYPEDAATLKSIVSGELPAGWADALP 360
FFVPEDVKSHWSRHVPQGAAFEADWNAKFAEYEKKYPEDAATLKSIVSGELPAGWADALP
Sbjct: 301 FFVPEDVKSHWSRHVPQGAAFEADWNAKFAEYEKKYPEDAATLKSIVSGELPAGWADALP 360
Query: 361 KYTPESPADATRNLSQQCLNALAKVVPGLLGGSADLASSNMTLLKMFGDFQKDTPEERNV 420
KYTPESPADATRNLSQQCLNALAKVVPGLLGGSADLASSNMTLLKMFGDFQKDTPEERNV
Sbjct: 361 KYTPESPADATRNLSQQCLNALAKVVPGLLGGSADLASSNMTLLKMFGDFQKDTPEERNV 420
Query: 421 RFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAMRISALCEAGVIYVMTHDSI 480
RFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAMRISALCEAGVIYVMTHDSI
Sbjct: 421 RFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAMRISALCEAGVIYVMTHDSI 480
Query: 481 GLGEDGPTHQPIEHLVSFRAMPNILMLRPADGNETAGAYKIAVLNRKRPSVLALSRQKLA 540
GLGEDGPTHQPIEHLVSFRAMPNILMLRPADGNETAGAYKIAVLNRKRPSVLALSRQKLA
Sbjct: 481 GLGEDGPTHQPIEHLVSFRAMPNILMLRPADGNETAGAYKIAVLNRKRPSVLALSRQKLA 540
Query: 541 QLPGTSIEGVEKGGYIVSDNSTGNKPDFIVMSTGSELEIVAKAADELRKEGKTVRVVSFV 600
QLPGTSIEGVEKGGYIVSDNSTGNKPDFIVMSTGSELEIVAKAADELRKEGKTVRVVSFV
Sbjct: 541 QLPGTSIEGVEKGGYIVSDNSTGNKPDFIVMSTGSELEIVAKAADELRKEGKTVRVVSFV 600
Query: 601 CWELFDEQSAEYKESVLPEAVTARVSLEAGSTLGWQKYVGSKGKAIGIDKFGASAPAGKI 660
CWELFDEQSAEYKESVLPEAVTARVSLEAGSTLGWQKYVGSKGKAIGIDKFGASAPAGKI
Sbjct: 601 CWELFDEQSAEYKESVLPEAVTARVSLEAGSTLGWQKYVGSKGKAIGIDKFGASAPAGKI 660
Query: 661 YQEYGITAENVIATAKSL 678
YQEYGITAENVIATAKSL
Sbjct: 661 YQEYGITAENVIATAKSL 678
>Os04g0266900 Bacterial transketolase family protein
Length = 714
Score = 1173 bits (3035), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 543/661 (82%), Positives = 606/661 (91%)
Query: 18 LLEKSVNTIRFLAIDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFIL 77
++E+SVNTIRFLA+D+VEKA SGHPGLPMGCAP+GH+L+DE +R+NPKNPYWF+RDRFIL
Sbjct: 54 VVEQSVNTIRFLAVDSVEKAKSGHPGLPMGCAPLGHVLFDEFLRFNPKNPYWFDRDRFIL 113
Query: 78 SAGHGCMLQYALLHLAGYDAVLEEDLKQFRQWGSKTPGHPENFETPGVEVTTGPLGQGIA 137
SAGHGCMLQYALLHLAGYD+V +DLK FRQWGS+TPGHPENFETPGVEVTTGPLGQG A
Sbjct: 114 SAGHGCMLQYALLHLAGYDSVTMDDLKAFRQWGSRTPGHPENFETPGVEVTTGPLGQGFA 173
Query: 138 NAVGLALAEKHLAARFNKPDSEIVDHYTYCILGDGCQMEGISNEACSLAGHWGLGKLIAF 197
NAVGLALAEKHLAARFNKPD +IVDH+TY ILGDGCQMEG+SNEA SLAGHWGLGKLIAF
Sbjct: 174 NAVGLALAEKHLAARFNKPDLKIVDHHTYVILGDGCQMEGVSNEASSLAGHWGLGKLIAF 233
Query: 198 YDDNHISIDGDTEIAFTEDVSARFEALGWHTIWVKNGNDGYDEIRAAIKEAKAVTDKPTL 257
YDDNHISIDG T IAFTED AR+EALGWHTIWVKNGN GYD+IRAAIKEAKAV DKPTL
Sbjct: 234 YDDNHISIDGSTGIAFTEDALARYEALGWHTIWVKNGNTGYDDIRAAIKEAKAVKDKPTL 293
Query: 258 IKVTTTIGFGSPNKANSYSVHGSALGTKEVEATRENLGWPYEPFFVPEDVKSHWSRHVPQ 317
IKVTTTIG+GSPNKAN+YSVHGSALGTKEVEAT+ NL W +EPF VP++VK HWS H+ +
Sbjct: 294 IKVTTTIGYGSPNKANTYSVHGSALGTKEVEATKNNLSWHHEPFHVPDEVKRHWSHHIDE 353
Query: 318 GAAFEADWNAKFAEYEKKYPEDAATLKSIVSGELPAGWADALPKYTPESPADATRNLSQQ 377
GA+ EA+WN K EYEKKY ++AA LKSI+SGELP+GW ++LPKYTPE+PADATRNLSQQ
Sbjct: 354 GASLEAEWNKKIVEYEKKYRQEAAELKSIISGELPSGWDNSLPKYTPENPADATRNLSQQ 413
Query: 378 CLNALAKVVPGLLGGSADLASSNMTLLKMFGDFQKDTPEERNVRFGVREHGMGAICNGIA 437
CLNALAK +PG LGGSADLA+SNMTLLKMFGDFQKDTPEERN+RFGVREH MGAI NGIA
Sbjct: 414 CLNALAKAIPGFLGGSADLATSNMTLLKMFGDFQKDTPEERNIRFGVREHAMGAISNGIA 473
Query: 438 LHSPGLIPYCATFFVFTDYMRAAMRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLVS 497
LHSPGLIPYCATFFVFTDYMRAA+R+SALC + VI+VMTHDSIGLGEDGPTHQP+E L S
Sbjct: 474 LHSPGLIPYCATFFVFTDYMRAAIRLSALCGSRVIFVMTHDSIGLGEDGPTHQPVEQLFS 533
Query: 498 FRAMPNILMLRPADGNETAGAYKIAVLNRKRPSVLALSRQKLAQLPGTSIEGVEKGGYIV 557
RAMPNILMLRPADGNET+GAYKIAVLNR+RPSVLALSRQKL QL GTS EGV KGGYI+
Sbjct: 534 LRAMPNILMLRPADGNETSGAYKIAVLNRQRPSVLALSRQKLQQLKGTSAEGVAKGGYII 593
Query: 558 SDNSTGNKPDFIVMSTGSELEIVAKAADELRKEGKTVRVVSFVCWELFDEQSAEYKESVL 617
SDNS+GNKPD I++ TGSELEIV KAADELRK+GKTVRVVS VCWELF+EQS +YKESV
Sbjct: 594 SDNSSGNKPDIILIGTGSELEIVEKAADELRKDGKTVRVVSLVCWELFEEQSEKYKESVF 653
Query: 618 PEAVTARVSLEAGSTLGWQKYVGSKGKAIGIDKFGASAPAGKIYQEYGITAENVIATAKS 677
P VT+R+S+EAG T GW+KY+G KGKAIG+D+FG+SAPAGKIY+E G+T ENVIATAKS
Sbjct: 654 PSEVTSRISVEAGVTFGWEKYIGEKGKAIGVDRFGSSAPAGKIYKELGLTVENVIATAKS 713
Query: 678 L 678
L
Sbjct: 714 L 714
>AK110336
Length = 712
Score = 970 bits (2507), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 463/660 (70%), Positives = 545/660 (82%), Gaps = 2/660 (0%)
Query: 19 LEKSVNTIRFLAIDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFILS 78
++K VN IRFLAIDAV KA SGHPGLPMG APM ++L++E M++NPKNP W NRDRF+LS
Sbjct: 54 IDKCVNAIRFLAIDAVNKAKSGHPGLPMGAAPMSYVLFNETMKFNPKNPAWANRDRFVLS 113
Query: 79 AGHGCMLQYALLHLAGYDAVLEEDLKQFRQWGSKTPGHPENFETPGVEVTTGPLGQGIAN 138
AGHG MLQYAL+HL GY++V +D+KQFRQW SKTPGHPENF T GVEVTTGPLGQGI N
Sbjct: 114 AGHGSMLQYALMHLVGYESVQLDDIKQFRQWDSKTPGHPENFLTTGVEVTTGPLGQGICN 173
Query: 139 AVGLALAEKHLAARFNKPDSEIVDHYTYCILGDGCQMEGISNEACSLAGHWGLGKLIAFY 198
AVGLA+AE HLAARFNKPD++++DHYTYCI+GDGC MEGISNEACSLAGHWGLGKLIA Y
Sbjct: 174 AVGLAVAEAHLAARFNKPDAKVIDHYTYCIMGDGCMMEGISNEACSLAGHWGLGKLIALY 233
Query: 199 DDNHISIDGDTEIAFTEDVSARFEALGWHTIWVKNGNDGYDEIRAAIKEAKAVTDKPTLI 258
DDN+ISIDG TEI+FTEDV+ARFEALGWH VK+GN +D +R AI AKAVTDKP+L+
Sbjct: 234 DDNNISIDGHTEISFTEDVAARFEALGWHVQHVKDGNTDFDALRKAIANAKAVTDKPSLL 293
Query: 259 KVTTTIGFGSPNKANSYSVHGSALGTKEVEATRENLGWPYEPFFVPEDVKSHWSRHVPQG 318
KV+T IG+GSPNKA+++ VHG+ LG +E ATR+NL WPY F VP++V V +G
Sbjct: 294 KVSTLIGYGSPNKADTHDVHGAPLGPEETAATRDNLKWPYAEFEVPQEVYDVMRGAVSRG 353
Query: 319 AAFEADWNAKFAEYEKKYPEDAATLKSIVSGELPAGWADALPKYTPESPADATRNLSQQC 378
AA E +WNA A Y+ KYP++A L+ ++SG+LPAGW ALP YTPE ATR SQ
Sbjct: 354 AAAEEEWNAAMAAYKSKYPKEAEELEGLLSGKLPAGWEKALPSYTPEDKGLATRQYSQIM 413
Query: 379 LNALAKVVPGLLGGSADLASSNMTLLKMFGDFQKDTPEERNVRFGVREHGMGAICNGIAL 438
LNALA V+PGL+GGSADLA SN+TL+KMFGDFQKD+ ERN+RFGVREHGMGAICNGI L
Sbjct: 414 LNALAPVLPGLIGGSADLAPSNLTLMKMFGDFQKDSNAERNLRFGVREHGMGAICNGIGL 473
Query: 439 HSPGLIPYCATFFVFTDYMRAAMRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLVSF 498
H+ GLIPYCATF++FTDYMRAAMR+SAL E GVIYVMTHDSIGLGEDGPTHQPIEHL SF
Sbjct: 474 HNSGLIPYCATFYIFTDYMRAAMRMSALSEMGVIYVMTHDSIGLGEDGPTHQPIEHLASF 533
Query: 499 RAMPNILMLRPADGNETAGAYKIAVLNRKRPSVLALSRQKLAQLPGTSIEGVEKGGYIVS 558
RAMPN+LM+RP GNETAGAYK+AV NRKRPS +ALSRQ +A LPG S+EGVEKG Y++
Sbjct: 534 RAMPNMLMIRPCGGNETAGAYKVAVSNRKRPSTIALSRQGMANLPGCSVEGVEKGAYVIH 593
Query: 559 DNSTGNKPDFIVMSTGSELEIVAKAADELRKEGKTVRVVSFVCWELFDEQSAEYKESVLP 618
KPD I + TGSEL + +AA +L EGK VRVVS CWELF EQSAEYKESVLP
Sbjct: 594 GGDA--KPDVIFIGTGSELPLAVEAAKKLEAEGKKVRVVSMPCWELFAEQSAEYKESVLP 651
Query: 619 EAVTARVSLEAGSTLGWQKYVGSKGKAIGIDKFGASAPAGKIYQEYGITAENVIATAKSL 678
+ VTARV++EAGS+ GW++Y S GK +GID FGASAPAG +Y+++GIT +NV+A AKSL
Sbjct: 652 KDVTARVAVEAGSSFGWERYTTSNGKFVGIDDFGASAPAGILYEKFGITLDNVVAAAKSL 711
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.134 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 24,008,873
Number of extensions: 1063835
Number of successful extensions: 2255
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 2254
Number of HSP's successfully gapped: 3
Length of query: 678
Length of database: 17,035,801
Length adjustment: 108
Effective length of query: 570
Effective length of database: 11,396,689
Effective search space: 6496112730
Effective search space used: 6496112730
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 159 (65.9 bits)