BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0128200 Os06g0128200|AK068886
         (510 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os06g0128200  LMBR1-like conserved region domain containing ...   846   0.0  

>Os06g0128200 LMBR1-like conserved region domain containing protein
          Length = 510

 Score =  846 bits (2186), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 423/480 (88%), Positives = 423/480 (88%)

Query: 31  QHPDDANQAYFPKLVVVLGITVALLSILMLPADVANRQACRRAIYSGACSLTLPMKTLWL 90
           QHPDDANQAYFPKLVVVLGITVALLSILMLPADVANRQACRRAIYSGACSLTLPMKTLWL
Sbjct: 31  QHPDDANQAYFPKLVVVLGITVALLSILMLPADVANRQACRRAIYSGACSLTLPMKTLWL 90

Query: 91  AVYIADAVLVFLVIPFAMFYYEGDQDKSVGKRLTXXXXXXXXXXXXXXXXXXXXXXXXXX 150
           AVYIADAVLVFLVIPFAMFYYEGDQDKSVGKRLT                          
Sbjct: 91  AVYIADAVLVFLVIPFAMFYYEGDQDKSVGKRLTSALLWVAVSAVVCGLILGILYGLVGK 150

Query: 151 XDFTVRHLSSAVETFPNSFTSFSTGQPCISTSPKQCAAYTAPANSQTTWTMRATFPEYVV 210
            DFTVRHLSSAVETFPNSFTSFSTGQPCISTSPKQCAAYTAPANSQTTWTMRATFPEYVV
Sbjct: 151 VDFTVRHLSSAVETFPNSFTSFSTGQPCISTSPKQCAAYTAPANSQTTWTMRATFPEYVV 210

Query: 211 ALATIVGSVLFTIFGGVGIACLPLGLIFSFVRRPKAVITRSQYIKEATXXXXXXXXXXXX 270
           ALATIVGSVLFTIFGGVGIACLPLGLIFSFVRRPKAVITRSQYIKEAT            
Sbjct: 211 ALATIVGSVLFTIFGGVGIACLPLGLIFSFVRRPKAVITRSQYIKEATELGKKARELKKA 270

Query: 271 XXXXHQEEKSGKKGRKWRKNVKALGKELVLLEDDMKALEEMYPQGEQAEATWALTVLGYI 330
               HQEEKSGKKGRKWRKNVKALGKELVLLEDDMKALEEMYPQGEQAEATWALTVLGYI
Sbjct: 271 AEALHQEEKSGKKGRKWRKNVKALGKELVLLEDDMKALEEMYPQGEQAEATWALTVLGYI 330

Query: 331 GKLLFGAVGLIISIAWVAHIVIYLLIDPPLSSFLNEIFVKLDGVWGLLGTAAFAFFCFYL 390
           GKLLFGAVGLIISIAWVAHIVIYLLIDPPLSSFLNEIFVKLDGVWGLLGTAAFAFFCFYL
Sbjct: 331 GKLLFGAVGLIISIAWVAHIVIYLLIDPPLSSFLNEIFVKLDGVWGLLGTAAFAFFCFYL 390

Query: 391 LIAVIAGEMMLGLKLVFITIHPMKWGGTLMNSFLFNVGLILLCSISVIQFCXXXXXXXXX 450
           LIAVIAGEMMLGLKLVFITIHPMKWGGTLMNSFLFNVGLILLCSISVIQFC         
Sbjct: 391 LIAVIAGEMMLGLKLVFITIHPMKWGGTLMNSFLFNVGLILLCSISVIQFCATAFAYYAQ 450

Query: 451 XXXXXEIFGHTLQSLRGIKYLYKYNVFQYGFVALAILTLFYYAIFGWRKRKPTGRFQLSN 510
                EIFGHTLQSLRGIKYLYKYNVFQYGFVALAILTLFYYAIFGWRKRKPTGRFQLSN
Sbjct: 451 ATAAQEIFGHTLQSLRGIKYLYKYNVFQYGFVALAILTLFYYAIFGWRKRKPTGRFQLSN 510



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.328    0.141    0.436 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,503,340
Number of extensions: 465318
Number of successful extensions: 1371
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1369
Number of HSP's successfully gapped: 1
Length of query: 510
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 405
Effective length of database: 11,553,331
Effective search space: 4679099055
Effective search space used: 4679099055
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 158 (65.5 bits)