Os06g0128200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : LMBR1-like conserved region domain containing protein.
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Os06g0128200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : LMBR1-like conserved region domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 14.32 | 0.178 | 11.8 | 0.807 | 0.257 | 0.806 | 0.218 | 1.4 | 0.421 | 20.1 | 0.9002 | 1492 | -- | -- |
| 15.35 | 0.182 | 11.8 | 0.911 | 0.234 | 0.621 | 0.329 | -- | 0.473 | 19.3 | 2.266 | 1539 | -- | -- |
| 14.45 | 0.177 | 11.8 | 0.811 | 0.254 | 0.834 | -- | 1.48 | 0.42 | 19.7 | 0.8637 | 1505 | -- | -- |
| 15.58 | 0.184 | 11.8 | 0.911 | 0.242 | 0.629 | -- | -- | 0.473 | 19.3 | 2.143 | 1539 | -- | -- |
| 17.73 | 0.196 | 11.8 | 0.775 | -- | 0.972 | -- | 1.82 | 0.417 | -- | 0.8601 | 1511 | -- | -- |
| 17.8 | 0.198 | 11.8 | 0.828 | 0.316 | -- | 0.324 | -- | 0.377 | 21.1 | -- | -- | -- | -- |
| 18.16 | 0.2 | 11.8 | 0.816 | 0.316 | -- | -- | -- | 0.376 | 21 | -- | -- | -- | -- |
| 19.07 | 0.203 | 11.8 | 0.929 | -- | 0.647 | -- | -- | 0.47 | -- | 2.151 | 1532 | -- | -- |
| 34.92 | 0.275 | 11.8 | -- | 0.305 | 0.302 | -- | -- | 0.331 | 19.1 | 9.998 | 1738 | -- | -- |
| 23.88 | 0.228 | 11.8 | 0.817 | -- | -- | -- | -- | 0.374 | -- | -- | -- | -- | -- |
| 35.73 | 0.28 | 11.8 | -- | 0.315 | -- | -- | -- | 0.285 | 21.2 | -- | -- | -- | -- |
| 37.62 | 0.287 | 11.8 | -- | -- | 0.189 | -- | -- | 0.288 | -- | 2.151 | 1532 | -- | -- |
| 41.48 | 0.301 | 11.8 | -- | -- | -- | -- | -- | 0.284 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 13.95 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 6 | 20 |
| 3 | 14.08 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 7 | 22 |
| 4 | 14.10 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 7 | 12 |
| 19 | 14.22 | radiation | 1.0 | 1440 | < th | dose dependent | sin | 22 | NA |
| 37 | 14.31 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 19 | 1 |
| 44 | 14.36 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 9 | 20 |
| 46 | 14.37 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 12 | 17 |
| 50 | 14.38 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 9 | 10 |
| 61 | 14.39 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 12 | 7 |
| 110 | 14.42 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 3 | 15 |
| 143 | 14.47 | radiation | 1.0 | 1440 | < th | dose dependent | no | NA | NA |
| 178 | 14.47 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 9 | 23 |
| 179 | 14.47 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 23 |
| 199 | 14.48 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 21 |
| 210 | 14.50 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 14 | 5 |
| 211 | 14.50 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 10 | 10 |
| 213 | 14.51 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 15 | 3 |
| 221 | 14.52 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 16 | 23 |
| 229 | 14.55 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 10 | 11 |
| 235 | 14.56 | humidity | 90.0 | 1440 | > th | dose dependent | rect. | 18 | 6 |
| 236 | 14.56 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 17 | 10 |
| 246 | 14.58 | humidity | 90.0 | 720 | > th | dose dependent | sin | 15 | NA |
| 277 | 14.60 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 11 | 3 |
| 279 | 14.60 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 7 | 11 |
| 293 | 14.62 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 14 | 5 |
| 294 | 14.62 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 7 | 11 |
| 299 | 14.63 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 13 | 1 |
| 305 | 14.63 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 7 | 17 |
| 306 | 14.63 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 7 | 22 |
| 308 | 14.63 | humidity | 80.0 | 1440 | > th | dose dependent | rect. | 9 | 12 |
| 310 | 14.63 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 17 | 22 |
| 312 | 14.64 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 313 | 14.64 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 314 | 14.64 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 13 | 1 |
| 316 | 14.64 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 15 | 3 |
| 322 | 14.64 | humidity | 90.0 | 720 | > th | dose dependent | no | NA | NA |
| 323 | 14.64 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 13 | 1 |
| 329 | 14.64 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 17 | 18 |
| 330 | 14.64 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 13 | 21 |
| 344 | 14.65 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 13 | 1 |
| 346 | 14.65 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 11 | 16 |
| 377 | 14.67 | radiation | 1.0 | 1440 | < th | dose independent | sin | 23 | NA |
| 403 | 14.67 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 1 | 23 |
| 405 | 14.68 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 412 | 14.68 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 19 | 1 |
| 471 | 14.72 | humidity | 90.0 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 472 | 14.72 | humidity | 80.0 | 1440 | > th | dose dependent | rect. | 18 | 3 |
| 480 | 14.73 | radiation | 1.0 | 1440 | > th | dose independent | sin | 23 | NA |
| 494 | 14.73 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 23 | 23 |
| 510 | 14.75 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 11 | 3 |
| 533 | 14.77 | humidity | 90.0 | 720 | > th | dose dependent | sin | 22 | NA |
| 534 | 14.77 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 16 | 2 |
| 551 | 14.78 | wind | 1.0 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 570 | 14.79 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 571 | 14.79 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 576 | 14.79 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 577 | 14.79 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 14 | 4 |
| 598 | 14.80 | humidity | 80.0 | 1440 | > th | dose independent | sin | 20 | NA |
| 600 | 14.80 | humidity | 90.0 | 1440 | > th | dose independent | rect. | 18 | 3 |
| 602 | 14.80 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 9 | 15 |
| 620 | 14.81 | humidity | 90.0 | 720 | > th | dose independent | rect. | 6 | 20 |
| 625 | 14.81 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 8 | 10 |
| 641 | 14.82 | humidity | 80.0 | 1440 | < th | dose independent | sin | 21 | NA |
| 668 | 14.83 | wind | 9.0 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 687 | 14.83 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 23 | 19 |
| 690 | 14.83 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 21 | 21 |
| 693 | 14.83 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 19 | 23 |
| 694 | 14.83 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 14 | 1 |
| 695 | 14.83 | humidity | 70.0 | 14400 | > th | dose dependent | rect. | 14 | 1 |
| 805 | 14.87 | wind | 9.0 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 836 | 14.88 | radiation | 1.0 | 1440 | < th | dose independent | no | NA | NA |
| 840 | 14.88 | humidity | 90.0 | 1440 | > th | dose independent | rect. | 17 | 7 |
| 890 | 14.88 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 9 | 23 |
| 891 | 14.88 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 23 |
| 916 | 14.89 | wind | 1.0 | 43200 | < th | dose independent | rect. | 1 | 2 |
| 936 | 14.89 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 21 |
| 985 | 14.90 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 989 | 14.90 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 13 | 5 |