BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0123000 Os06g0123000|AK108643
         (294 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os06g0123000  Conserved hypothetical protein                      471   e-133

>Os06g0123000 Conserved hypothetical protein
          Length = 294

 Score =  471 bits (1213), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 239/294 (81%), Positives = 239/294 (81%)

Query: 1   MGMEDDAAGRGTTXXXXXXXXXXXXXXXXXXTFAVIVMVIAMVSRPEEIQLSIDRGYITV 60
           MGMEDDAAGRGTT                  TFAVIVMVIAMVSRPEEIQLSIDRGYITV
Sbjct: 1   MGMEDDAAGRGTTVPFLVAVRFVVALAVGAVTFAVIVMVIAMVSRPEEIQLSIDRGYITV 60

Query: 61  YDDYGSEVLPTATTSLAAILGGFVQSRPSTAQLAVSLTASYSSQRGHKDKIINCSDITIG 120
           YDDYGSEVLPTATTSLAAILGGFVQSRPSTAQLAVSLTASYSSQRGHKDKIINCSDITIG
Sbjct: 61  YDDYGSEVLPTATTSLAAILGGFVQSRPSTAQLAVSLTASYSSQRGHKDKIINCSDITIG 120

Query: 121 LVDMTLSPASWASGQMPAKINDTIVWFKLNNGFTLLKDTSHTEAMTVTITNSSQIMEYIE 180
           LVDMTLSPASWASGQMPAKINDTIVWFKLNNGFTLLKDTSHTEAMTVTITNSSQIMEYIE
Sbjct: 121 LVDMTLSPASWASGQMPAKINDTIVWFKLNNGFTLLKDTSHTEAMTVTITNSSQIMEYIE 180

Query: 181 HRLKQEDVFHVLVMVHIITXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHTFY 240
           HRLKQEDVFHVLVMVHIIT                                     HTFY
Sbjct: 181 HRLKQEDVFHVLVMVHIITPSTNPNSPSPPPPPPPPSPAPAPAPSNAQSPSNNGPAHTFY 240

Query: 241 CWPITIGYGYSALQDTDDVGCKSIGSSVVPGNQTNRANATSVTSGESMPVQIGG 294
           CWPITIGYGYSALQDTDDVGCKSIGSSVVPGNQTNRANATSVTSGESMPVQIGG
Sbjct: 241 CWPITIGYGYSALQDTDDVGCKSIGSSVVPGNQTNRANATSVTSGESMPVQIGG 294



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.317    0.131    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,383,238
Number of extensions: 233390
Number of successful extensions: 701
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 699
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 194
Effective length of database: 11,814,401
Effective search space: 2291993794
Effective search space used: 2291993794
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 155 (64.3 bits)