BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0121300 Os06g0121300|AK064715
(226 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0121300 Conserved hypothetical protein 317 4e-87
Os06g0121600 293 8e-80
>Os06g0121300 Conserved hypothetical protein
Length = 226
Score = 317 bits (812), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 168/226 (74%), Positives = 168/226 (74%)
Query: 1 MDDGSKLQPTATRFRWLNLARCTXXXXXXXXXXXXXXXXXXXXXRPEKLRLSVAGGRVSV 60
MDDGSKLQPTATRFRWLNLARCT RPEKLRLSVAGGRVSV
Sbjct: 1 MDDGSKLQPTATRFRWLNLARCTLASVVTVLAVVVIARAVVVLLRPEKLRLSVAGGRVSV 60
Query: 61 SRMPAMKPLPRVNMSFVLRAFNPSGRASIEYTGITVALRXXXXXXXXXXXXXXXXXXXXX 120
SRMPAMKPLPRVNMSFVLRAFNPSGRASIEYTGITVALR
Sbjct: 61 SRMPAMKPLPRVNMSFVLRAFNPSGRASIEYTGITVALRAIDDGDAASPAAAAPIIAQFP 120
Query: 121 XXXVPVAQQVXXXXXXXXXXXXXEDVPLRYVKALFDGRGISAAIQVDGFLTTRMEIDGRI 180
VPVAQQV EDVPLRYVKALFDGRGISAAIQVDGFLTTRMEIDGRI
Sbjct: 121 FPDVPVAQQVAHEAAARVSLAAAEDVPLRYVKALFDGRGISAAIQVDGFLTTRMEIDGRI 180
Query: 181 SRSNGGVATTFYCLPVTIAVGDGDDDESRTRDTWCLDKSDVPAFVG 226
SRSNGGVATTFYCLPVTIAVGDGDDDESRTRDTWCLDKSDVPAFVG
Sbjct: 181 SRSNGGVATTFYCLPVTIAVGDGDDDESRTRDTWCLDKSDVPAFVG 226
>Os06g0121600
Length = 257
Score = 293 bits (749), Expect = 8e-80, Method: Compositional matrix adjust.
Identities = 156/214 (72%), Positives = 156/214 (72%)
Query: 1 MDDGSKLQPTATRFRWLNLARCTXXXXXXXXXXXXXXXXXXXXXRPEKLRLSVAGGRVSV 60
MDDGSKLQPTATRFRWLNLARCT RPEKLRLSVAGGRVSV
Sbjct: 1 MDDGSKLQPTATRFRWLNLARCTLASVVTVLAVVVIARAVVVLLRPEKLRLSVAGGRVSV 60
Query: 61 SRMPAMKPLPRVNMSFVLRAFNPSGRASIEYTGITVALRXXXXXXXXXXXXXXXXXXXXX 120
SRMPAMKPLPRVNMSFVLRAFNPSGRASIEYTGITVALR
Sbjct: 61 SRMPAMKPLPRVNMSFVLRAFNPSGRASIEYTGITVALRAIDDGDAASPAAAAPIIAQFP 120
Query: 121 XXXVPVAQQVXXXXXXXXXXXXXEDVPLRYVKALFDGRGISAAIQVDGFLTTRMEIDGRI 180
VPVAQQV EDVPLRYVKALFDGRGISAAIQVDGFLTTRMEIDGRI
Sbjct: 121 FPDVPVAQQVAHEAAARVSLAAAEDVPLRYVKALFDGRGISAAIQVDGFLTTRMEIDGRI 180
Query: 181 SRSNGGVATTFYCLPVTIAVGDGDDDESRTRDTW 214
SRSNGGVATTFYCLPVTIAVGDGDDDESRTRDTW
Sbjct: 181 SRSNGGVATTFYCLPVTIAVGDGDDDESRTRDTW 214
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.137 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,867,421
Number of extensions: 192999
Number of successful extensions: 370
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 367
Number of HSP's successfully gapped: 2
Length of query: 226
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 129
Effective length of database: 11,971,043
Effective search space: 1544264547
Effective search space used: 1544264547
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 154 (63.9 bits)