BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0119900 Os06g0119900|AK067782
         (218 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os06g0119900  Conserved hypothetical protein                      394   e-110
Os06g0121000  Conserved hypothetical protein                       70   8e-13
Os06g0119200                                                       67   1e-11
Os06g0121400                                                       64   6e-11

>Os06g0119900 Conserved hypothetical protein
          Length = 218

 Score =  394 bits (1011), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 190/206 (92%), Positives = 190/206 (92%)

Query: 13  KKLQVASSSPNTHKSYWSTKQYXXXXXXXXXXXXXXXXGISALLSPGEIDFSVTKASRMI 72
           KKLQVASSSPNTHKSYWSTKQY                GISALLSPGEIDFSVTKASRMI
Sbjct: 13  KKLQVASSSPNTHKSYWSTKQYILVAVVGTLAATVIVIGISALLSPGEIDFSVTKASRMI 72

Query: 73  LPLDGGVELNLTVAAANPGWRAAVEYRGFDVKLHYTPFDGEPTLLNEDDASSVRTPFVQP 132
           LPLDGGVELNLTVAAANPGWRAAVEYRGFDVKLHYTPFDGEPTLLNEDDASSVRTPFVQP
Sbjct: 73  LPLDGGVELNLTVAAANPGWRAAVEYRGFDVKLHYTPFDGEPTLLNEDDASSVRTPFVQP 132

Query: 133 PRNTTAIPVRVFVSGDYWVQNMMRGNDIPITAQVTATVRFLIGKACTRSYHIAVSCYLGL 192
           PRNTTAIPVRVFVSGDYWVQNMMRGNDIPITAQVTATVRFLIGKACTRSYHIAVSCYLGL
Sbjct: 133 PRNTTAIPVRVFVSGDYWVQNMMRGNDIPITAQVTATVRFLIGKACTRSYHIAVSCYLGL 192

Query: 193 DLFKRPTVSFNHNNTADCVAAGPETV 218
           DLFKRPTVSFNHNNTADCVAAGPETV
Sbjct: 193 DLFKRPTVSFNHNNTADCVAAGPETV 218



>Os06g0121000 Conserved hypothetical protein
          Length = 211

 Score = 70.5 bits (171), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 60/174 (34%), Positives = 83/174 (47%), Gaps = 24/174 (13%)

Query: 52  ISALLSPGEIDFSVTKASRMILPLDGGVELNLT--VAAANPGWRAAVEYRGFDVKLHYTP 109
           +SA+LSP  + FSV +     +  +G V +N+T  +AAA  G RA V Y    V L +  
Sbjct: 37  VSAVLSPAAMKFSVVQVEHAFVGRNGPVGMNMTFTIAAATRGKRAGVRYSEVAVDLVH-- 94

Query: 110 FDGEPTLLNEDDASSVRT-----PFVQP-PRNTTAIPVRVFVSGDYWVQNMMRGNDIPIT 163
              + TL     ++  R      PF QP P N T I V +F+    W  N   G +  ++
Sbjct: 95  -QEDLTLFTRSYSAVARNAGTKLPFEQPQPGNATNITVPLFIGYKDW-DNATTGRE-QLS 151

Query: 164 AQVTATVRFLIGKACTRSYHIAVSCYLGLDLFKRPTVSFNHNNTADCVAAGPET 217
            QV ATV F++G A TR++ IAV C L   L           NT D V + P T
Sbjct: 152 VQVRATVHFIVGVAYTRAFRIAVLCPLNYSL-----------NTTDPVVSYPNT 194



>Os06g0119200 
          Length = 199

 Score = 67.0 bits (162), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 54/144 (37%), Positives = 67/144 (46%), Gaps = 8/144 (5%)

Query: 53  SALLSPGEIDFSVTKASRMILPLDGGVELNLTVAAANPGWRAAVEYRGFDVKLHYTPFDG 112
           S +L P  + FSV  A       +    LNLT+ A NP  RAAVEY   DV L Y   D 
Sbjct: 30  SFVLRPPPLAFSVADARSGATDENKAAFLNLTLVAGNPSGRAAVEYEALDVMLWYGTTDY 89

Query: 113 EPT----LLNEDDASSVRTPFVQPPRNTTAIPVRVFVSGDYWVQNMMRGNDI---PITAQ 165
             T    LL    A+      +QPPRN TA+ V      D +VQ ++ G      P    
Sbjct: 90  IETNTSLLLVGLAAADEAALLLQPPRNATAVEVTARTLDDRFVQEIVAGEGRRTGPFNVA 149

Query: 166 VTATVRFLI-GKACTRSYHIAVSC 188
           V A VRF + G   TR Y++ VSC
Sbjct: 150 VAAQVRFKVAGVVYTRPYNVRVSC 173



>Os06g0121400 
          Length = 199

 Score = 64.3 bits (155), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 56/178 (31%), Positives = 77/178 (43%), Gaps = 10/178 (5%)

Query: 17  VASSSPNTHKSYWSTKQYXXXXXXXXXXXXXXXXGISALLSPGEIDFSVTKASRMILPLD 76
           +ASS P    S+W  K Y                  S +LSP  I FSVT     I    
Sbjct: 1   MASSHP--FPSWWGAKHYIMAAIAGTLAASAIVIVTSVVLSPTRISFSVTGGGASISRSA 58

Query: 77  GGVE--LNLTVAAANPGWRAAVEYRGFDVKLHYTPFDGEPTLLNEDDASSVRTPFVQPPR 134
           GG    LNLT+AA NP  RA V+Y  F V L    F     + + +       PF QPP 
Sbjct: 59  GGQAFLLNLTIAADNPSHRAGVQYLAFAVSLQQ--FTARNRMESVEATVQDGVPFYQPPA 116

Query: 135 NTTAIPV-RVFVSGDYWVQNMMRGNDI---PITAQVTATVRFLIGKACTRSYHIAVSC 188
           ++ ++ V  + V  +++  +   G      P+T  V   VRF +  A +R Y +AV C
Sbjct: 117 SSRSVLVTALLVDKNFFGASHGGGGGGRGPPLTVVVRGQVRFKVWLAYSRPYDVAVEC 174



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.318    0.133    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,758,670
Number of extensions: 257505
Number of successful extensions: 501
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 498
Number of HSP's successfully gapped: 5
Length of query: 218
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 121
Effective length of database: 11,971,043
Effective search space: 1448496203
Effective search space used: 1448496203
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 154 (63.9 bits)