Os06g0119900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os06g0119900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 168.45 | 0.61 | 8.3 | -1.33 | 0.382 | 1.88 | 0.612 | -4.56 | -0.0307 | 2.68 | 23.09 | 1379 | -- | -- |
| 178.85 | 0.623 | 8.15 | 0.00487 | 0.332 | 1.6 | 0.488 | -- | 0.299 | 2.8 | 21.2 | 1303 | -- | -- |
| 169.67 | 0.607 | 8.3 | -1.34 | 0.382 | 1.89 | -- | -4.46 | -0.039 | 2.78 | 23 | 1382 | -- | -- |
| 179.2 | 0.623 | 8.14 | 0.001 | 0.317 | 1.63 | -- | -- | 0.289 | 3.81 | 21.48 | 1226 | -- | -- |
| 174.88 | 0.616 | 8.28 | -1.18 | -- | 2.02 | -- | -4.22 | -0.0039 | -- | 22.95 | 1240 | -- | -- |
| 262.58 | 0.76 | 8.06 | 0.568 | 0.548 | -- | 0.618 | -- | 0.66 | 2.62 | -- | -- | -- | -- |
| 263.92 | 0.761 | 8.07 | 0.552 | 0.552 | -- | -- | -- | 0.656 | 2.75 | -- | -- | -- | -- |
| 184.35 | 0.632 | 8.14 | 0.00306 | -- | 1.72 | -- | -- | 0.301 | -- | 21.5 | 1184 | -- | -- |
| 179.05 | 0.623 | 8.14 | -- | 0.318 | 1.67 | -- | -- | 0.299 | 4.49 | 21.4 | 1171 | -- | -- |
| 281.63 | 0.784 | 8.06 | 0.576 | -- | -- | -- | -- | 0.67 | -- | -- | -- | -- | -- |
| 271.95 | 0.771 | 8.08 | -- | 0.563 | -- | -- | -- | 0.594 | 2.76 | -- | -- | -- | -- |
| 184.34 | 0.632 | 8.15 | -- | -- | 1.72 | -- | -- | 0.292 | -- | 21.51 | 1185 | -- | -- |
| 290.38 | 0.795 | 8.08 | -- | -- | -- | -- | -- | 0.606 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 165.53 | wind | 5 | 43200 | > th | dose dependent | rect. | 14 | 2 |
| 2 | 166.11 | wind | 5 | 43200 | > th | dose dependent | rect. | 13 | 9 |
| 5 | 166.46 | wind | 5 | 43200 | > th | dose dependent | rect. | 13 | 11 |
| 10 | 167.18 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 13 | 167.57 | wind | 5 | 43200 | > th | dose dependent | rect. | 13 | 18 |
| 15 | 167.61 | wind | 7 | 43200 | > th | dose independent | rect. | 13 | 19 |
| 18 | 167.68 | wind | 7 | 43200 | < th | dose independent | rect. | 13 | 19 |
| 34 | 168.30 | wind | 9 | 14400 | > th | dose dependent | rect. | 20 | 16 |
| 35 | 168.31 | wind | 7 | 43200 | < th | dose independent | rect. | 14 | 2 |
| 38 | 168.57 | wind | 5 | 43200 | > th | dose dependent | sin | 19 | NA |
| 39 | 168.58 | wind | 5 | 43200 | > th | dose dependent | rect. | 10 | 11 |
| 43 | 168.77 | wind | 7 | 43200 | > th | dose independent | rect. | 14 | 2 |
| 44 | 168.78 | humidity | 80 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 49 | 169.03 | humidity | 80 | 43200 | > th | dose independent | rect. | 21 | 2 |
| 50 | 169.04 | wind | 7 | 43200 | < th | dose independent | rect. | 13 | 8 |
| 60 | 169.35 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 12 |
| 62 | 169.41 | wind | 9 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 72 | 169.68 | wind | 7 | 43200 | < th | dose independent | rect. | 13 | 14 |
| 75 | 169.79 | wind | 7 | 43200 | > th | dose independent | rect. | 13 | 8 |
| 82 | 169.88 | wind | 7 | 43200 | < th | dose independent | rect. | 13 | 12 |
| 95 | 170.16 | wind | 7 | 43200 | > th | dose independent | rect. | 13 | 15 |
| 116 | 170.46 | wind | 7 | 43200 | < th | dose independent | rect. | 5 | 16 |
| 124 | 170.57 | wind | 5 | 43200 | > th | dose dependent | rect. | 5 | 16 |
| 127 | 170.61 | wind | 7 | 43200 | > th | dose independent | rect. | 13 | 12 |
| 128 | 170.62 | wind | 5 | 43200 | > th | dose independent | rect. | 10 | 13 |
| 133 | 170.68 | wind | 7 | 43200 | > th | dose independent | rect. | 5 | 16 |
| 159 | 170.98 | wind | 5 | 43200 | > th | dose independent | sin | 17 | NA |
| 161 | 170.98 | wind | 7 | 43200 | > th | dose independent | rect. | 2 | 19 |
| 168 | 171.03 | wind | 5 | 43200 | > th | dose independent | rect. | 13 | 10 |
| 186 | 171.26 | wind | 5 | 43200 | > th | dose independent | rect. | 11 | 17 |
| 195 | 171.34 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 10 |
| 209 | 171.41 | temperature | 20 | 1440 | > th | dose dependent | rect. | 13 | 16 |
| 215 | 171.48 | wind | 5 | 43200 | < th | dose independent | rect. | 10 | 14 |
| 225 | 171.55 | temperature | 25 | 1440 | < th | dose independent | rect. | 17 | 7 |
| 226 | 171.57 | wind | 3 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 237 | 171.62 | temperature | 25 | 1440 | > th | dose independent | rect. | 17 | 7 |
| 243 | 171.63 | temperature | 20 | 1440 | > th | dose dependent | sin | 15 | NA |
| 285 | 171.85 | radiation | 20 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 370 | 172.29 | wind | 5 | 43200 | < th | dose independent | sin | 17 | NA |
| 405 | 172.52 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 22 |
| 470 | 172.84 | wind | 9 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 534 | 173.04 | radiation | 40 | 43200 | < th | dose independent | rect. | 9 | 2 |
| 550 | 173.10 | radiation | 20 | 43200 | < th | dose independent | rect. | 3 | 6 |
| 551 | 173.10 | radiation | 20 | 43200 | < th | dose independent | rect. | 24 | 9 |
| 561 | 173.11 | radiation | 20 | 43200 | < th | dose independent | rect. | 19 | 14 |
| 663 | 173.38 | temperature | 25 | 1440 | > th | dose dependent | rect. | 16 | 23 |
| 666 | 173.39 | temperature | 25 | 1440 | > th | dose dependent | rect. | 23 | 23 |
| 679 | 173.44 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 689 | 173.46 | temperature | 25 | 1440 | > th | dose dependent | rect. | 2 | 23 |
| 708 | 173.50 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 1 |
| 734 | 173.55 | temperature | 25 | 1440 | > th | dose dependent | rect. | 14 | 23 |
| 741 | 173.57 | wind | 5 | 43200 | > th | dose independent | rect. | 9 | 9 |
| 769 | 173.67 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 4 |
| 919 | 174.03 | wind | 5 | 43200 | > th | dose independent | rect. | 10 | 7 |
| 947 | 174.13 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 3 |