BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0118600 Os06g0118600|AK071942
         (149 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os06g0118600  Conserved hypothetical protein                      181   2e-46
Os04g0451800                                                       94   3e-20
Os09g0563400                                                       81   3e-16
Os06g0308550                                                       72   2e-13
Os10g0367200                                                       70   5e-13
Os09g0452000                                                       66   1e-11

>Os06g0118600 Conserved hypothetical protein
          Length = 149

 Score =  181 bits (458), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 102/149 (68%), Positives = 102/149 (68%)

Query: 1   AFGSSGCGGGDRVCGHQRHGGLRRLAEGVGDGCIWLARHHLVERSKTGLAQRSAVDXXXX 60
           AFGSSGCGGGDRVCGHQRHGGLRRLAEGVGDGCIWLARHHLVERSKTGLAQRSAVD    
Sbjct: 1   AFGSSGCGGGDRVCGHQRHGGLRRLAEGVGDGCIWLARHHLVERSKTGLAQRSAVDGSGG 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXAEKHGXXXXXXXXCEEELLVCMEWSSAHEGWP 120
                                       AEKHG        CEEELLVCMEWSSAHEGWP
Sbjct: 61  RLGARGTGSGDGGRLGARGASGGGGRLGAEKHGRRWRRRPRCEEELLVCMEWSSAHEGWP 120

Query: 121 XXXXXXXVLYVGRASMVVEHRCASRGSLC 149
                  VLYVGRASMVVEHRCASRGSLC
Sbjct: 121 AGGAGAGVLYVGRASMVVEHRCASRGSLC 149



>Os04g0451800 
          Length = 489

 Score = 94.4 bits (233), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 63/142 (44%), Positives = 69/142 (48%), Gaps = 4/142 (2%)

Query: 10  GDRVCGHQRHGGLRRLAEGVGDGCIWLARHHLVERSKTGLAQRSAVDXXXXXXXXXXXXX 69
           G R  GH+RHGG  RLAEGVGDGCIW  RH LVE S+TGLAQR A D             
Sbjct: 297 GGRDSGHRRHGGPGRLAEGVGDGCIWPTRHVLVEGSETGLAQRGAADGSGGRLGARGAGG 356

Query: 70  XXXXXXXXXXXX----XXXXXXXAEKHGXXXXXXXXCEEELLVCMEWSSAHEGWPXXXXX 125
                                               CEEELLV +  SSAH+GWP     
Sbjct: 357 GVGGRLGVRGAADGGRPDWRERRVRWRRPAWRRRPRCEEELLVGVARSSAHKGWPAGDAI 416

Query: 126 XXVLYVGRASMVVEHRCASRGS 147
             V +VGRA +VVEHRC SRGS
Sbjct: 417 AGVPHVGRACVVVEHRCVSRGS 438



>Os09g0563400 
          Length = 604

 Score = 81.3 bits (199), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 43/56 (76%), Positives = 46/56 (82%), Gaps = 1/56 (1%)

Query: 1   AFGSSGCGGGDRVCGHQRHGGLRRLAEGVGDGCIWLARHHLVERSKTGLAQRSAVD 56
           A G+SGCGGGDRV GH RHGGL+RLAEGVGD  IW ARH LVE S+TGLAQRS  D
Sbjct: 441 ALGNSGCGGGDRV-GHWRHGGLKRLAEGVGDDYIWPARHRLVEGSETGLAQRSTAD 495



>Os06g0308550 
          Length = 317

 Score = 71.6 bits (174), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 39/55 (70%), Positives = 42/55 (76%), Gaps = 2/55 (3%)

Query: 1   AFGSSGCGGGDRVCGHQRHGGLRRLAEGVGDGCIWLARHHLVERSKTGLAQRSAV 55
           AFGSSGCGGGDR  GH+RHGGL R  EGV DGCIW ARH L E S++GLAQ  A 
Sbjct: 74  AFGSSGCGGGDR--GHRRHGGLGRRTEGVADGCIWPARHRLEEGSESGLAQSGAA 126



>Os10g0367200 
          Length = 184

 Score = 70.1 bits (170), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 51/129 (39%), Positives = 55/129 (42%), Gaps = 12/129 (9%)

Query: 4   SSGCGGGDRVCGHQRHGGLRRLAEGVGDGCIWLARHHLVERSKTGLAQRSAVDXXXXXXX 63
           +SGCGGGDR  GH RH G  RLAEGV DG  WL RHHL E  +T LAQR A D       
Sbjct: 29  NSGCGGGDRDYGHWRHDGFGRLAEGVADGYFWLVRHHLDEGLETSLAQRGAADGSRGRLG 88

Query: 64  XXXXXXXXXXXXXXXXXXXXXXXXXAEKH------------GXXXXXXXXCEEELLVCME 111
                                     E+             G        CEEELLV + 
Sbjct: 89  VRGTSGEDGDRLGGRGATDGGRPDWRERPVRWRRPAWRERRGRWWRRRPRCEEELLVDVT 148

Query: 112 WSSAHEGWP 120
            SS HEGWP
Sbjct: 149 RSSVHEGWP 157



>Os09g0452000 
          Length = 362

 Score = 65.9 bits (159), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 33/47 (70%), Positives = 35/47 (74%)

Query: 10  GDRVCGHQRHGGLRRLAEGVGDGCIWLARHHLVERSKTGLAQRSAVD 56
           G R   H+RHGG  RLAEGVGDGCIW  RH LVE S+TGLAQR A D
Sbjct: 273 GGRDSSHRRHGGPGRLAEGVGDGCIWPTRHRLVEGSETGLAQRGAAD 319



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.322    0.137    0.463 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,268,534
Number of extensions: 138708
Number of successful extensions: 536
Number of sequences better than 1.0e-10: 12
Number of HSP's gapped: 530
Number of HSP's successfully gapped: 12
Length of query: 149
Length of database: 17,035,801
Length adjustment: 92
Effective length of query: 57
Effective length of database: 12,232,113
Effective search space: 697230441
Effective search space used: 697230441
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 151 (62.8 bits)