Os06g0118600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os06g0118600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 111.3 | 0.496 | 8.43 | -0.44 | 0.995 | 2.85 | -0.811 | -5.13 | -0.436 | 4.51 | 4.034 | 344 | -- | -- |
| 126.02 | 0.523 | 8.32 | 0.359 | 1.03 | 2.78 | 0.321 | -- | -0.222 | 4.66 | -17.76 | 343 | -- | -- |
| 112.42 | 0.494 | 8.43 | -0.445 | 0.952 | 2.88 | -- | -4.81 | -0.435 | 4.94 | 4.178 | 407 | -- | -- |
| 126.35 | 0.524 | 8.33 | 0.365 | 1.02 | 2.77 | -- | -- | -0.219 | 4.61 | -13.97 | 344 | -- | -- |
| 115.17 | 0.5 | 8.45 | -0.585 | -- | 2.28 | -- | -4.19 | -0.443 | -- | 1.24 | 1178 | -- | -- |
| 208.33 | 0.677 | 8.25 | 0.956 | 0.289 | -- | -0.375 | -- | 0.179 | 2.32 | -- | -- | -- | -- |
| 208.82 | 0.677 | 8.25 | 0.966 | 0.29 | -- | -- | -- | 0.181 | 2.56 | -- | -- | -- | -- |
| 127.4 | 0.526 | 8.4 | -0.228 | -- | 2.29 | -- | -- | -0.479 | -- | -4.644 | 8302 | -- | -- |
| 129.52 | 0.53 | 8.33 | -- | 1.07 | 2.92 | -- | -- | -0.274 | 4.57 | 14.1 | 333 | -- | -- |
| 213.77 | 0.683 | 8.25 | 0.978 | -- | -- | -- | -- | 0.189 | -- | -- | -- | -- | -- |
| 233.41 | 0.715 | 8.27 | -- | 0.309 | -- | -- | -- | 0.0737 | 2.61 | -- | -- | -- | -- |
| 128.34 | 0.528 | 8.39 | -- | -- | 2.16 | -- | -- | -0.422 | -- | 5.542 | 8278 | -- | -- |
| 239 | 0.722 | 8.27 | -- | -- | -- | -- | -- | 0.08 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 108.87 | temperature | 15 | 720 | > th | dose dependent | rect. | 17 | 22 |
| 6 | 109.58 | temperature | 15 | 270 | > th | dose dependent | rect. | 2 | 23 |
| 35 | 112.08 | temperature | 10 | 270 | > th | dose dependent | no | NA | NA |
| 37 | 112.11 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 23 |
| 41 | 112.18 | temperature | 15 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 50 | 112.53 | temperature | 10 | 720 | > th | dose dependent | rect. | 8 | 23 |
| 51 | 112.54 | temperature | 15 | 720 | > th | dose dependent | rect. | 10 | 23 |
| 62 | 113.13 | temperature | 30 | 720 | < th | dose dependent | rect. | 15 | 22 |
| 64 | 113.20 | temperature | 30 | 270 | < th | dose dependent | rect. | 21 | 23 |
| 83 | 113.67 | temperature | 15 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 97 | 113.98 | temperature | 15 | 720 | > th | dose dependent | rect. | 6 | 23 |
| 108 | 114.17 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 23 |
| 125 | 114.46 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 161 | 115.05 | temperature | 30 | 720 | < th | dose dependent | rect. | 5 | 23 |
| 165 | 115.10 | temperature | 10 | 1440 | > th | dose dependent | rect. | 7 | 16 |
| 235 | 115.45 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 308 | 115.81 | temperature | 10 | 1440 | > th | dose dependent | sin | 23 | NA |
| 362 | 116.00 | temperature | 30 | 720 | < th | dose dependent | rect. | 11 | 23 |
| 393 | 116.12 | temperature | 30 | 720 | < th | dose dependent | rect. | 9 | 23 |
| 529 | 116.57 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 530 | 116.58 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 532 | 116.60 | temperature | 30 | 1440 | < th | dose dependent | rect. | 6 | 17 |
| 561 | 116.71 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 639 | 117.01 | temperature | 10 | 1440 | > th | dose dependent | rect. | 15 | 8 |
| 664 | 117.11 | temperature | 30 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 695 | 117.25 | temperature | 15 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 841 | 117.69 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 868 | 117.79 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 6 |
| 885 | 117.84 | temperature | 10 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 932 | 117.99 | temperature | 30 | 1440 | < th | dose dependent | sin | 23 | NA |
| 970 | 118.12 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 1 |