BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0116900 Os06g0116900|AK063112
(241 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0116900 Conserved hypothetical protein 364 e-101
Os06g0118500 268 2e-72
>Os06g0116900 Conserved hypothetical protein
Length = 241
Score = 364 bits (934), Expect = e-101, Method: Compositional matrix adjust.
Identities = 185/241 (76%), Positives = 185/241 (76%)
Query: 1 MGGDGKHTKLPWLGVARYXXXXXXXXXXXXXXXXXIRMVLRPVELDLSVANGAVSVERPE 60
MGGDGKHTKLPWLGVARY IRMVLRPVELDLSVANGAVSVERPE
Sbjct: 1 MGGDGKHTKLPWLGVARYAVTAVLAATVAATVVLAIRMVLRPVELDLSVANGAVSVERPE 60
Query: 61 SPSAASLVKYKVTLRAYNPSGRAVVHFGGDNLVRLIYGAAAQTELAAFTLPAFVVPQQES 120
SPSAASLVKYKVTLRAYNPSGRAVVHFGGDNLVRLIYGAAAQTELAAFTLPAFVVPQQES
Sbjct: 61 SPSAASLVKYKVTLRAYNPSGRAVVHFGGDNLVRLIYGAAAQTELAAFTLPAFVVPQQES 120
Query: 121 HFVTKXXXXXXXXXXXXXXXRLYDGETDQVVVQAVASLSFTIXXXXXXXXXXXXHNFTFH 180
HFVTK RLYDGETDQVVVQAVASLSFTI HNFTFH
Sbjct: 121 HFVTKSAFLNASALPASLAARLYDGETDQVVVQAVASLSFTIGGARGVSAGRRGHNFTFH 180
Query: 181 CWPVSISSYYEVSGGEASCSQDTTEAAVAGLTHDRCIGGPCPEPYKXXXXXXXXXXXXIK 240
CWPVSISSYYEVSGGEASCSQDTTEAAVAGLTHDRCIGGPCPEPYK IK
Sbjct: 181 CWPVSISSYYEVSGGEASCSQDTTEAAVAGLTHDRCIGGPCPEPYKNSGNCSGNNSTGIK 240
Query: 241 G 241
G
Sbjct: 241 G 241
>Os06g0118500
Length = 192
Score = 268 bits (685), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 142/190 (74%), Positives = 145/190 (76%), Gaps = 13/190 (6%)
Query: 38 MVLRPVELDLSVANGAVSVERPESPSAASLVKYKVTLRAYNPSGRAVVHFGGDNLVRLIY 97
MVLRPVELDLSVA+ AVSVERPESPSAASLVKYKVTLRA+NPSGR VVHFGGDNL
Sbjct: 1 MVLRPVELDLSVASCAVSVERPESPSAASLVKYKVTLRAFNPSGRVVVHFGGDNL----- 55
Query: 98 GAAAQTELAAFTLPAFVVPQQESHFVTKXXXXXXXXXXXXXXXRLYDGETDQVVVQAVAS 157
LAAFTLPAFVVPQQESHFVTK RLYDGETDQVVVQAVAS
Sbjct: 56 -------LAAFTLPAFVVPQQESHFVTKSAFLNASALPASLAARLYDGETDQVVVQAVAS 108
Query: 158 LSFTIXXXXXXXXXXXXHNFTF-HCWPVSISSYYEVSGGEASCSQDTTEAAVAGLTHDRC 216
LSFTI HNFT HCWPVSISSYYEVSGG+ASCSQDTTEAAVAGLTHDR
Sbjct: 109 LSFTIGGARGVSAGKRGHNFTLIHCWPVSISSYYEVSGGKASCSQDTTEAAVAGLTHDRY 168
Query: 217 IGGPCPEPYK 226
IGGPCPE YK
Sbjct: 169 IGGPCPETYK 178
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.134 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,688,141
Number of extensions: 217604
Number of successful extensions: 427
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 424
Number of HSP's successfully gapped: 2
Length of query: 241
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 143
Effective length of database: 11,918,829
Effective search space: 1704392547
Effective search space used: 1704392547
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 154 (63.9 bits)