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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0116900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.44 (0.0701) R2 : 0.574
β1 : -4.85 (0.387) R2dD : 0.522 R2D : -0.16
β2 : 0.796 (0.146) R2dC : 0.028 R2C : -0.0419
β3 : 4.18 (0.196) R2dE : 0.575 R2E : 0.276
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -6.92 (1.12) R2dD*E : 0.118 R2D*E : -0.17
γ1 : -0.159 (0.148) R2dN8 : 0.00152 R2N8 : -0.0304
σ : 1.07
deviance : 527.4
__
_____
C
peak time of C : 14.5
E
wheather : temperature
threshold : 20.9
memory length : 5297
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 16.9
open length of G : 1.03

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
519.2 1.07 5.46 -4.92 0.81 4.32 -1.67 -7.08 -0.172 14.6 20.56 5298 16.9 1.08
556.98 1.1 5.4 -3.41 0.933 4.84 -1.42 -- -0.438 14.4 16.47 8169 17.3 0.377
527.4 1.07 5.44 -4.85 0.796 4.18 -- -6.92 -0.159 14.5 20.9 5297 16.9 1.03
556.94 1.1 5.39 -3.47 0.899 4.92 -- -- -0.435 14.3 16.41 8186 17.4 0.199
543.5 1.09 5.48 -4.83 -- 4.17 -- -6.47 -0.263 -- 20.68 5731 17.5 0.0296
1080.19 1.54 5.06 -1.38 0.00253 -- -1.56 -- 0.955 14.9 -- -- -- --
1087.53 1.54 5.07 -1.41 0.13 -- -- -- 0.947 20.6 -- -- -- --
574.68 1.12 5.42 -3.59 -- 5.37 -- -- -0.454 -- 16.19 8677 17.3 0.35
864.14 1.37 5.32 -- 0.216 4.92 -- -- 0.165 15.7 15.3 7231 17.4 0.267
1088.48 1.54 5.07 -1.41 -- -- -- -- 0.946 -- -- -- -- --
1140.25 1.58 5.03 -- 0.137 -- -- -- 1.1 19.9 -- -- -- --
847.79 1.36 5.3 -- -- 3.91 -- -- 0.362 -- 16.62 7232 17.4 0.202
1141.27 1.58 5.03 -- -- -- -- -- 1.1 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 545.08 radiation 1 43200 > th dose independent rect. 18 1
11 548.92 wind 5 43200 > th dose dependent rect. 5 16
13 550.56 wind 9 43200 > th dose dependent rect. 19 2
14 551.01 wind 5 43200 > th dose independent rect. 5 16
15 551.12 humidity 90 43200 > th dose independent rect. 22 1
17 551.70 wind 5 43200 < th dose independent rect. 5 16
23 552.96 wind 5 43200 > th dose independent rect. 9 13
34 554.01 wind 5 43200 < th dose independent rect. 9 14
57 555.83 wind 3 43200 > th dose dependent rect. 5 12
59 555.92 wind 5 43200 > th dose independent sin 22 NA
86 557.10 humidity 90 43200 < th dose independent rect. 22 1
88 557.14 wind 5 43200 > th dose dependent sin 22 NA
94 557.49 wind 5 43200 < th dose independent sin 23 NA
113 558.29 wind 5 43200 < th dose independent rect. 5 13
139 559.03 wind 1 43200 > th dose dependent rect. 20 1
140 559.07 humidity 90 43200 < th dose independent rect. 18 5
164 560.11 wind 3 43200 > th dose dependent rect. 9 7
173 560.40 wind 9 43200 < th dose dependent rect. 20 1
211 561.34 humidity 90 43200 > th dose independent rect. 20 3
233 562.16 wind 5 43200 < th dose independent rect. 11 20
246 562.59 wind 5 43200 > th dose independent rect. 11 20
282 563.45 wind 5 43200 > th dose independent rect. 9 8
284 563.52 wind 9 43200 < th dose independent rect. 19 2
348 565.17 humidity 90 43200 > th dose dependent rect. 21 1
350 565.31 wind 9 43200 > th dose independent rect. 19 2
411 567.03 temperature 20 4320 > th dose dependent rect. 17 1
441 567.86 wind 5 43200 > th dose dependent rect. 11 21
457 568.41 radiation 1 43200 < th dose independent rect. 18 9
471 568.48 radiation 1 43200 < th dose independent rect. 18 7
482 568.61 radiation 1 43200 < th dose independent rect. 18 2
486 568.70 radiation 1 43200 < th dose independent rect. 18 4
551 570.48 wind 5 43200 > th dose independent rect. 15 8
591 571.16 humidity 80 43200 < th dose dependent rect. 21 2
606 571.55 humidity 90 43200 > th dose dependent rect. 19 4
613 571.65 temperature 25 4320 > th dose independent rect. 6 8
621 571.75 wind 5 43200 > th dose dependent rect. 13 14
644 572.24 radiation 1 43200 < th dose dependent rect. 18 1
655 572.38 radiation 1 43200 < th dose dependent rect. 18 4
672 572.58 temperature 25 4320 > th dose independent sin 4 NA
693 573.05 humidity 90 43200 < th dose independent rect. 9 1
697 573.18 wind 5 43200 > th dose dependent rect. 13 12
706 573.32 radiation 1 43200 < th dose dependent rect. 18 9
716 573.45 wind 7 43200 > th dose independent rect. 23 18
747 574.01 temperature 25 4320 < th dose independent rect. 6 8
757 574.20 temperature 20 14400 < th dose independent rect. 21 1
775 574.47 wind 5 43200 < th dose independent rect. 15 8
786 574.64 temperature 20 1440 > th dose dependent rect. 13 20
793 574.68 wind 5 43200 > th dose dependent rect. 13 23
796 574.74 temperature 25 4320 > th dose independent rect. 21 21
806 574.93 temperature 25 4320 < th dose independent sin 3 NA
824 575.21 radiation 1 14400 < th dose dependent rect. 2 3
836 575.31 wind 5 43200 > th dose dependent no NA NA
869 575.72 humidity 90 43200 > th dose independent rect. 9 1
872 575.74 humidity 80 43200 > th dose dependent rect. 18 1
880 575.87 temperature 25 4320 < th dose independent rect. 4 16
884 575.92 wind 5 43200 < th dose independent no NA NA
889 575.96 wind 3 43200 > th dose dependent rect. 19 23
892 575.98 temperature 25 4320 < th dose independent rect. 6 18
900 576.07 radiation 1 14400 < th dose dependent rect. 4 1
902 576.09 temperature 25 4320 > th dose independent rect. 3 17
920 576.35 temperature 25 4320 < th dose independent rect. 21 21
936 576.48 temperature 25 4320 > th dose independent rect. 6 18
938 576.50 temperature 20 4320 > th dose dependent rect. 24 22
943 576.56 temperature 20 4320 > th dose dependent rect. 2 20
967 576.77 temperature 20 4320 > th dose dependent rect. 24 19
969 576.77 temperature 20 4320 > th dose dependent rect. 21 22
973 576.80 temperature 20 4320 > th dose dependent rect. 13 9
974 576.81 atmosphere 1005 43200 > th dose independent rect. 18 1
975 576.81 temperature 20 4320 > th dose dependent rect. 7 22
991 576.93 temperature 20 1440 > th dose dependent sin 14 NA
994 576.96 wind 9 43200 < th dose dependent rect. 8 7