BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0115600 Os06g0115600|Os06g0115600
(530 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0115600 Conserved hypothetical protein 1020 0.0
>Os06g0115600 Conserved hypothetical protein
Length = 530
Score = 1020 bits (2638), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 494/530 (93%), Positives = 494/530 (93%)
Query: 1 MEGRGLSELFRNTSEDMFLKAMMENSMGVAAAAPSMEMMGFRNLSQGFREDSEELFNSWL 60
MEGRGLSELFRNTSEDMFLKAMMENSMGVAAAAPSMEMMGFRNLSQGFREDSEELFNSWL
Sbjct: 1 MEGRGLSELFRNTSEDMFLKAMMENSMGVAAAAPSMEMMGFRNLSQGFREDSEELFNSWL 60
Query: 61 MNGEASFLKIHKILSQYMKIPGFSAMNNRPRQPSRLSSEAAGFPNQQHEIAQEHFPTDNL 120
MNGEASFLKIHKILSQYMKIPGFSAMNNRPRQPSRLSSEAAGFPNQQHEIAQEHFPTDNL
Sbjct: 61 MNGEASFLKIHKILSQYMKIPGFSAMNNRPRQPSRLSSEAAGFPNQQHEIAQEHFPTDNL 120
Query: 121 IPQNLAVHSEFTMNHNQQQLKYYSFSPTSYCVLDFFQIVLNWLSPMTGMQQKRECKLVTY 180
IPQNLAVHSEFTMNHNQQQLKYYSFSPTSYCVLDFFQIVLNWLSPMTGMQQKRECKLVTY
Sbjct: 121 IPQNLAVHSEFTMNHNQQQLKYYSFSPTSYCVLDFFQIVLNWLSPMTGMQQKRECKLVTY 180
Query: 181 FWQRKRYAAMQSNMPPITTETIETANKLRQDLTNASTVNSAPMSNXXXXXXXXXXXXXXX 240
FWQRKRYAAMQSNMPPITTETIETANKLRQDLTNASTVNSAPMSN
Sbjct: 181 FWQRKRYAAMQSNMPPITTETIETANKLRQDLTNASTVNSAPMSNTPSQTPTFVSPSSSS 240
Query: 241 XXXLDNPHIVAQDTITSVVSMLKDTLERKKLSSHANGDTSSGISFGFYDSQHFQQNILGG 300
LDNPHIVAQDTITSVVSMLKDTLERKKLSSHANGDTSSGISFGFYDSQHFQQNILGG
Sbjct: 241 TSPLDNPHIVAQDTITSVVSMLKDTLERKKLSSHANGDTSSGISFGFYDSQHFQQNILGG 300
Query: 301 TDIFPLVTTSQIQDSVMLPKVERPTEQGSGNFVAPANQVWLGTASREPSQSGSSTAIPAP 360
TDIFPLVTTSQIQDSVMLPKVERPTEQGSGNFVAPANQVWLGTASREPSQSGSSTAIPAP
Sbjct: 301 TDIFPLVTTSQIQDSVMLPKVERPTEQGSGNFVAPANQVWLGTASREPSQSGSSTAIPAP 360
Query: 361 SAGFEVCDDLPPIGQAMTVCESTRTNAANGNGTADCRSKGKDFRERILKENLKDDRKKGS 420
SAGFEVCDDLPPIGQAMTVCESTRTNAANGNGTADCRSKGKDFRERILKENLKDDRKKGS
Sbjct: 361 SAGFEVCDDLPPIGQAMTVCESTRTNAANGNGTADCRSKGKDFRERILKENLKDDRKKGS 420
Query: 421 LTRMGSISSEQADKGDPTKKRRVERSRKMAEAKERSSTPVIPSDIQVVLKRCETLEKEVR 480
LTRMGSISSEQADKGDPTKKRRVERSRKMAEAKERSSTPVIPSDIQVVLKRCETLEKEVR
Sbjct: 421 LTRMGSISSEQADKGDPTKKRRVERSRKMAEAKERSSTPVIPSDIQVVLKRCETLEKEVR 480
Query: 481 SLKLNLSFMNRKDSEQTKQIEELQKQNXXXXXXXXXXXXXXXXXXSDTNT 530
SLKLNLSFMNRKDSEQTKQIEELQKQN SDTNT
Sbjct: 481 SLKLNLSFMNRKDSEQTKQIEELQKQNEDLVEEKERLLEEIERIVSDTNT 530
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.313 0.127 0.359
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 16,205,710
Number of extensions: 668079
Number of successful extensions: 1591
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1590
Number of HSP's successfully gapped: 1
Length of query: 530
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 424
Effective length of database: 11,501,117
Effective search space: 4876473608
Effective search space used: 4876473608
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 158 (65.5 bits)