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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0115600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.16 (0.0461) R2 : 0.119
β1 : 0.0393 (0.169) R2dD : 0.00011 R2D : -0.00636
β2 : -- (--) R2dC : -- R2C : --
β3 : 2.07 (0.442) R2dE : 0.0437 R2E : 0.0225
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -8.96 (1.53) R2dD*E : 0.0683 R2D*E : 0.0449
γ1 : -0.317 (0.0986) R2dN8 : 0.0268 R2N8 : 0.0246
σ : 0.863
deviance : 343.4
__
_____
C
peak time of C : --
E
wheather : humidity
threshold : 89.67
memory length : 31
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 2.6
open length of G : 1.15

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
341.96 0.869 3.16 0.05 0.096 2.03 0.509 -9.21 -0.314 2.62 89.88 33 2.9 0.944
361.92 0.886 3.15 0.0465 0.0943 2.73 0.18 -- -0.322 2.42 90.58 7 2.85 1.54
342.69 0.862 3.16 0.0362 0.107 2.04 -- -8.95 -0.317 0.591 90 32 2.58 1.05
361.89 0.886 3.16 0.0309 0.103 2.74 -- -- -0.323 0.356 90.39 7 3.89 0.765
343.4 0.863 3.16 0.0393 -- 2.07 -- -8.96 -0.317 -- 89.67 31 2.6 1.15
378.76 0.912 3.16 0.0101 0.151 -- 0.127 -- -0.348 1.78 -- -- -- --
378.82 0.911 3.16 0.00608 0.152 -- -- -- -0.348 1.83 -- -- -- --
362.54 0.887 3.15 0.0351 -- 2.78 -- -- -0.321 -- 90.41 11 3.89 0.764
361.91 0.886 3.16 -- 0.103 2.74 -- -- -0.326 0.349 90.4 7 3.89 0.765
380.21 0.911 3.16 0.0123 -- -- -- -- -0.345 -- -- -- -- --
378.82 0.91 3.16 -- 0.152 -- -- -- -0.349 1.83 -- -- -- --
362.57 0.887 3.15 -- -- 2.77 -- -- -0.325 -- 90.41 9 3.89 0.77
380.22 0.91 3.16 -- -- -- -- -- -0.346 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 342.19 humidity 90.0 30 < th dose independent rect. 3 1
3 342.57 humidity 90.0 30 < th dose dependent rect. 3 1
6 342.75 humidity 80.0 90 < th dose dependent rect. 2 3
49 352.30 atmosphere 1005.0 10 > th dose dependent rect. 3 1
53 355.90 temperature 20.0 10 < th dose dependent rect. 3 1
68 358.87 temperature 20.0 90 < th dose independent rect. 2 2
70 358.97 temperature 30.0 90 < th dose dependent rect. 4 22
71 359.09 temperature 30.0 4320 < th dose independent rect. 3 6
80 359.55 temperature 25.0 1440 > th dose dependent rect. 11 1
81 359.72 temperature 30.0 10 < th dose dependent rect. 12 14
82 359.76 temperature 30.0 90 < th dose dependent rect. 13 13
89 360.29 temperature 25.0 1440 > th dose independent rect. 9 2
90 360.31 atmosphere 1005.0 1440 > th dose independent rect. 9 7
92 360.35 atmosphere 1005.0 1440 > th dose independent rect. 11 3
94 360.44 atmosphere 1005.0 1440 > th dose independent rect. 11 5
96 360.52 atmosphere 1005.0 1440 < th dose independent rect. 13 1
97 360.53 atmosphere 1005.0 1440 > th dose independent rect. 13 1
101 360.61 temperature 25.0 1440 < th dose independent rect. 9 2
103 360.63 atmosphere 1005.0 1440 < th dose independent rect. 9 8
105 360.64 atmosphere 1005.0 1440 < th dose independent rect. 11 3
116 360.84 temperature 25.0 270 < th dose independent rect. 4 21
121 360.88 temperature 25.0 270 > th dose independent rect. 11 22
160 361.31 temperature 25.0 270 > th dose independent rect. 11 17
182 361.51 temperature 20.0 1440 > th dose dependent rect. 4 1
185 361.54 atmosphere 1000.0 90 < th dose dependent rect. 24 16
189 361.59 temperature 20.0 90 > th dose dependent sin 17 NA
205 361.71 atmosphere 1000.0 10 < th dose dependent rect. 1 16
209 361.74 atmosphere 1000.0 90 < th dose dependent rect. 8 8
227 361.87 temperature 25.0 4320 > th dose independent rect. 19 1
236 361.96 temperature 25.0 270 < th dose independent rect. 9 15
281 362.24 temperature 25.0 4320 < th dose independent rect. 19 1
295 362.34 atmosphere 995.0 1440 > th dose independent rect. 3 14
301 362.38 temperature 20.0 1440 > th dose dependent rect. 1 5
303 362.41 atmosphere 995.0 1440 > th dose independent rect. 3 21
306 362.41 atmosphere 1010.0 1440 < th dose dependent rect. 9 3
313 362.46 atmosphere 1010.0 1440 < th dose dependent rect. 11 1
314 362.46 temperature 20.0 1440 > th dose dependent rect. 23 7
322 362.52 temperature 20.0 1440 > th dose dependent rect. 23 14
336 362.60 temperature 20.0 1440 > th dose dependent rect. 1 2
340 362.61 temperature 20.0 270 > th dose dependent rect. 11 13
344 362.64 temperature 25.0 30 > th dose dependent rect. 15 1
347 362.65 temperature 30.0 90 < th dose dependent rect. 9 17
363 362.71 wind 1.0 90 > th dose independent rect. 4 22
369 362.73 temperature 30.0 1440 < th dose dependent rect. 23 4
372 362.74 temperature 20.0 270 > th dose dependent rect. 11 16
373 362.75 temperature 25.0 270 > th dose independent sin 18 NA
383 362.77 temperature 30.0 1440 < th dose dependent rect. 23 2
385 362.78 radiation 1.0 30 < th dose independent rect. 5 21
402 362.80 atmosphere 995.0 1440 > th dose independent rect. 3 12
409 362.81 temperature 25.0 1440 > th dose independent rect. 9 12
413 362.82 temperature 20.0 90 > th dose dependent rect. 14 13
426 362.85 temperature 25.0 1440 > th dose independent rect. 9 18
469 362.94 temperature 25.0 1440 > th dose independent rect. 24 21
527 363.05 temperature 30.0 4320 > th dose dependent rect. 8 1
556 363.09 temperature 20.0 1440 > th dose dependent sin 6 NA
584 363.14 atmosphere 1005.0 1440 > th dose independent sin 22 NA
600 363.17 temperature 25.0 270 > th dose independent rect. 22 23
601 363.17 temperature 25.0 4320 > th dose dependent rect. 15 1
611 363.20 temperature 25.0 1440 < th dose independent rect. 9 18
612 363.20 temperature 25.0 270 > th dose independent rect. 17 23
616 363.20 atmosphere 1000.0 90 < th dose dependent rect. 3 13
630 363.24 precipitation 0.1 30 > th dose independent rect. 5 9
636 363.24 atmosphere 1000.0 720 < th dose dependent rect. 8 1
638 363.24 precipitation 0.1 30 > th dose dependent rect. 5 9
664 363.28 temperature 25.0 270 > th dose independent rect. 5 23
686 363.31 temperature 25.0 1440 > th dose independent rect. 18 23
697 363.34 temperature 25.0 1440 < th dose independent rect. 24 21
704 363.35 temperature 25.0 1440 < th dose independent rect. 8 13
743 363.41 temperature 25.0 1440 > th dose independent sin 1 NA
768 363.45 precipitation 0.1 30 > th dose independent rect. 7 7
780 363.45 precipitation 0.1 30 > th dose dependent rect. 7 7
813 363.48 temperature 20.0 270 > th dose dependent rect. 11 22
814 363.49 temperature 25.0 270 > th dose independent no NA NA
815 363.49 temperature 25.0 1440 < th dose independent rect. 5 16
824 363.50 atmosphere 1005.0 1440 < th dose independent sin 22 NA
876 363.56 humidity 80.0 1440 > th dose independent rect. 24 1
909 363.60 atmosphere 995.0 1440 > th dose independent rect. 16 13
912 363.60 temperature 25.0 1440 > th dose independent rect. 13 23
915 363.61 wind 3.0 30 < th dose independent rect. 2 2
945 363.63 temperature 25.0 1440 > th dose independent rect. 1 16
957 363.64 temperature 25.0 1440 > th dose independent no NA NA
966 363.65 atmosphere 1005.0 10 < th dose independent rect. 12 11