BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0114600 Os06g0114600|AK067972
         (412 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os06g0114600  Conserved hypothetical protein                      702   0.0  

>Os06g0114600 Conserved hypothetical protein
          Length = 412

 Score =  702 bits (1812), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/412 (85%), Positives = 353/412 (85%)

Query: 1   MAAGAPPLAGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MAAGAPPLAGV                                                 
Sbjct: 1   MAAGAPPLAGVGDRGSSSSSSHPPPPPPPKILLAKPPLPPPSSSGADDDGGGGGGAGRSR 60

Query: 61  QATQPGSLSLVSDAWEVHTDKILPYLTENNDFMVIGVIGPTGVGKSTIMNELYGYDGSSP 120
           QATQPGSLSLVSDAWEVHTDKILPYLTENNDFMVIGVIGPTGVGKSTIMNELYGYDGSSP
Sbjct: 61  QATQPGSLSLVSDAWEVHTDKILPYLTENNDFMVIGVIGPTGVGKSTIMNELYGYDGSSP 120

Query: 121 GMLPPFATQTEEIKAMAKHCTAGIDIRISNERVILLDTQPVFSPSVLIDMMKPDGSSAIP 180
           GMLPPFATQTEEIKAMAKHCTAGIDIRISNERVILLDTQPVFSPSVLIDMMKPDGSSAIP
Sbjct: 121 GMLPPFATQTEEIKAMAKHCTAGIDIRISNERVILLDTQPVFSPSVLIDMMKPDGSSAIP 180

Query: 181 ILSGDPLSADLAHELMGIQLGVFLASVCNILLVVSEGINDLSMWDLILTVDLLKHNIPDP 240
           ILSGDPLSADLAHELMGIQLGVFLASVCNILLVVSEGINDLSMWDLILTVDLLKHNIPDP
Sbjct: 181 ILSGDPLSADLAHELMGIQLGVFLASVCNILLVVSEGINDLSMWDLILTVDLLKHNIPDP 240

Query: 241 SLLTSSTTQDKENKNDNQSGIEDYIADLCFVHARLREQDFSPSKLMVLKRVLEKHFKXXX 300
           SLLTSSTTQDKENKNDNQSGIEDYIADLCFVHARLREQDFSPSKLMVLKRVLEKHFK   
Sbjct: 241 SLLTSSTTQDKENKNDNQSGIEDYIADLCFVHARLREQDFSPSKLMVLKRVLEKHFKSSS 300

Query: 301 XXXXXXXATPQVSDSSVPSSMKIEDLSSNQQDIYLLPLRTPDNSTNFEYRTCPSMLGMLR 360
                  ATPQVSDSSVPSSMKIEDLSSNQQDIYLLPLRTPDNSTNFEYRTCPSMLGMLR
Sbjct: 301 FSIGSSGATPQVSDSSVPSSMKIEDLSSNQQDIYLLPLRTPDNSTNFEYRTCPSMLGMLR 360

Query: 361 DQILSRPSRSFSKNLTERDWLRSSAKIWDMVKKSPVILEYCKTLQDSGFFRK 412
           DQILSRPSRSFSKNLTERDWLRSSAKIWDMVKKSPVILEYCKTLQDSGFFRK
Sbjct: 361 DQILSRPSRSFSKNLTERDWLRSSAKIWDMVKKSPVILEYCKTLQDSGFFRK 412



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.317    0.134    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,073,048
Number of extensions: 463800
Number of successful extensions: 1596
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1596
Number of HSP's successfully gapped: 1
Length of query: 412
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 309
Effective length of database: 11,657,759
Effective search space: 3602247531
Effective search space used: 3602247531
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 157 (65.1 bits)