BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0114400 Os06g0114400|Os06g0114400
         (140 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os06g0114400  Conserved hypothetical protein                      249   5e-67
Os06g0487800                                                      160   3e-40
Os10g0381200                                                      104   2e-23
Os03g0627000                                                       99   1e-21

>Os06g0114400 Conserved hypothetical protein
          Length = 140

 Score =  249 bits (635), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 124/140 (88%), Positives = 124/140 (88%)

Query: 1   MAGQTGFPLLASCRRGDQAHQNYSISAQAQPEEEQKAIHDXXXXXXXQVEAALNRKNVEV 60
           MAGQTGFPLLASCRRGDQAHQNYSISAQAQPEEEQKAIHD       QVEAALNRKNVEV
Sbjct: 1   MAGQTGFPLLASCRRGDQAHQNYSISAQAQPEEEQKAIHDGGGAAGAQVEAALNRKNVEV 60

Query: 61  HPEEETVEDAWVPDHETGVFVPADEAAVSGTENHDHCXXXXXXXXXSPSVLDQAVFVREE 120
           HPEEETVEDAWVPDHETGVFVPADEAAVSGTENHDHC         SPSVLDQAVFVREE
Sbjct: 61  HPEEETVEDAWVPDHETGVFVPADEAAVSGTENHDHCGAAAAAAGGSPSVLDQAVFVREE 120

Query: 121 DMEDVERPAVDMAAANHKPK 140
           DMEDVERPAVDMAAANHKPK
Sbjct: 121 DMEDVERPAVDMAAANHKPK 140



>Os06g0487800 
          Length = 126

 Score =  160 bits (404), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 88/121 (72%), Positives = 91/121 (75%), Gaps = 5/121 (4%)

Query: 24  SISAQAQPEEEQKAIHDXXXXXXXQVEAALNRKNVEVHPEEETVE----DAWVPDHETGV 79
           S S QAQPEEEQK +H        QVEAALNRKNVE  PE+ETVE    D WVPDHET V
Sbjct: 7   SCSLQAQPEEEQKCVHCGGGVAGAQVEAALNRKNVEALPEDETVEGGPDDVWVPDHETCV 66

Query: 80  FVPADEAAVSGTENHDHCXXXXXXXXXSPSVLDQAVFVREEDMEDVERPAVDMAAANHKP 139
           FVPAD+AAV GTENHDHC         SPSVLDQAVFV EEDMEDVERPAVDMAAANHKP
Sbjct: 67  FVPADKAAVFGTENHDHCGAAAVAGG-SPSVLDQAVFVHEEDMEDVERPAVDMAAANHKP 125

Query: 140 K 140
           K
Sbjct: 126 K 126



>Os10g0381200 
          Length = 143

 Score =  104 bits (259), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 50/67 (74%), Positives = 56/67 (83%), Gaps = 1/67 (1%)

Query: 68  EDAWVPDHETGVFVPADEAAVSGTENHDHCXXXXXXXXXSPSVLDQAVFVREEDMEDVER 127
           EDAWVPDH+T +FVPADEAAVSGTENHDHC         SPSVLDQA+FV E+DMEDVER
Sbjct: 7   EDAWVPDHKTSIFVPADEAAVSGTENHDHC-GAAATAGGSPSVLDQAMFVCEDDMEDVER 65

Query: 128 PAVDMAA 134
           PAV+MA+
Sbjct: 66  PAVNMAS 72



>Os03g0627000 
          Length = 93

 Score = 99.0 bits (245), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 58/89 (65%), Positives = 63/89 (70%), Gaps = 5/89 (5%)

Query: 28  QAQPEEEQKAIHDXXXXXXXQVEAALNRKNVEVHPEEETVE----DAWVPDHETGVFVPA 83
           + +PEEEQK +H        QVEAALN KNVE  PE+ETVE    DAWVPDHETGVFVPA
Sbjct: 6   EIKPEEEQKGVHGGGGVAGAQVEAALNHKNVEALPEDETVEGGPEDAWVPDHETGVFVPA 65

Query: 84  DEAAVSGTENHDHCXXXXXXXXXSPSVLD 112
           D+AAVSGTENHDHC         SPSVLD
Sbjct: 66  DKAAVSGTENHDHC-GAAAAAGGSPSVLD 93



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.310    0.125    0.364 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,421,328
Number of extensions: 143561
Number of successful extensions: 215
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 211
Number of HSP's successfully gapped: 4
Length of query: 140
Length of database: 17,035,801
Length adjustment: 91
Effective length of query: 49
Effective length of database: 12,284,327
Effective search space: 601932023
Effective search space used: 601932023
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 150 (62.4 bits)