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Os06g0114400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.4 (0.0489) R2 : 0.816
β1 : 2.54 (0.18) R2dD : 0.0841 R2D : 0.0652
β2 : 1.45 (0.192) R2dC : 0.0566 R2C : -0.312
β3 : -5.2 (0.167) R2dE : 0.97 R2E : 0.629
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 1.14 (0.105) R2dN8 : 0.0646 R2N8 : 0.0441
σ : 0.915
deviance : 385.93
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C
peak time of C : 3.35
E
wheather : radiation
threshold : 0.435
memory length : 260
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 4.73
open length of G : 22.2

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
365.92 0.899 10.4 2.6 1.43 -5.19 2.81 -0.227 1.15 3.42 0.4335 266 4.83 22.1
365.45 0.89 10.3 2.64 1.45 -5.18 2.83 -- 1.18 3.36 0.4399 262 4.8 22.2
375.07 0.902 10.4 2.51 1.48 -5.23 -- 1.54 1.13 3.32 0.44 264 4.8 22.1
385.93 0.915 10.4 2.54 1.45 -5.2 -- -- 1.14 3.35 0.435 260 4.73 22.2
397.03 0.928 10.4 2.53 -- -4.26 -- 1.7 1.09 -- 0.4397 250 4.98 21.8
613.05 1.16 10.2 3.13 4.29 -- -1.01 -- 1.47 12.2 -- -- -- --
617.48 1.16 10.2 3.09 4.3 -- -- -- 1.46 12.1 -- -- -- --
405.39 0.938 10.4 2.63 -- -4.24 -- -- 1.16 -- 0.4572 239 5 21.7
555.57 1.1 10.4 -- 1.74 -5.44 -- -- 1.02 2.96 0.4 262 4.73 22.2
1779.94 1.97 10.3 2.95 -- -- -- -- 1.4 -- -- -- -- --
868.37 1.38 10.3 -- 4.26 -- -- -- 1.12 12.1 -- -- -- --
586.35 1.13 10.5 -- -- -4.25 -- -- 0.847 -- 0.4193 232 5.02 21.7
2009.1 2.09 10.4 -- -- -- -- -- 1.07 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 373.60 radiation 1 270 < th dose dependent rect. 5 22
2 388.45 radiation 1 270 < th dose independent rect. 5 22
11 406.55 temperature 10 270 > th dose dependent rect. 3 15
19 411.71 wind 5 43200 > th dose dependent rect. 13 1
25 414.59 wind 5 43200 > th dose dependent rect. 11 4
26 414.66 wind 7 43200 < th dose independent rect. 11 5
27 414.70 humidity 90 43200 > th dose independent rect. 21 4
28 414.71 humidity 90 43200 > th dose dependent rect. 23 1
30 414.94 wind 7 43200 > th dose independent rect. 11 5
31 414.94 humidity 90 43200 > th dose dependent rect. 21 4
32 415.11 temperature 10 10 > th dose dependent rect. 4 16
37 415.59 humidity 90 43200 > th dose dependent rect. 20 6
44 415.90 humidity 90 43200 > th dose independent rect. 23 1
52 416.24 radiation 1 14400 < th dose dependent rect. 1 4
54 416.44 humidity 90 43200 > th dose dependent rect. 19 8
66 417.02 radiation 1 14400 < th dose dependent rect. 3 2
67 417.10 humidity 90 43200 < th dose independent rect. 20 5
83 417.86 radiation 1 14400 < th dose dependent rect. 21 8
84 417.90 humidity 90 43200 < th dose independent rect. 19 7
94 418.28 radiation 20 14400 > th dose dependent rect. 16 15
109 418.94 temperature 25 1440 > th dose dependent rect. 11 21
117 419.30 temperature 25 1440 > th dose dependent rect. 11 9
121 419.46 temperature 25 1440 > th dose dependent rect. 11 14
163 420.11 temperature 25 1440 > th dose dependent sin 19 NA
188 420.57 temperature 25 1440 > th dose dependent rect. 15 17
206 420.90 humidity 90 43200 > th dose dependent sin 13 NA
208 420.95 temperature 25 1440 > th dose dependent rect. 16 1
227 421.43 temperature 25 1440 > th dose dependent rect. 15 4
240 421.59 radiation 10 43200 < th dose independent rect. 5 2
247 421.73 temperature 25 1440 > th dose dependent rect. 5 20
251 421.78 radiation 10 43200 < th dose independent rect. 1 6
263 421.83 radiation 10 43200 < th dose independent rect. 19 12
272 421.88 temperature 25 1440 > th dose dependent rect. 13 23
275 421.91 radiation 40 43200 < th dose dependent rect. 20 9
278 421.92 temperature 25 1440 > th dose dependent rect. 5 15
283 421.96 temperature 25 1440 > th dose dependent rect. 23 21
322 422.18 temperature 25 1440 > th dose dependent no NA NA
364 422.45 temperature 25 1440 > th dose dependent rect. 15 23
370 422.49 temperature 25 1440 > th dose dependent rect. 15 10
431 423.09 temperature 25 1440 > th dose dependent rect. 18 23
446 423.29 humidity 90 43200 > th dose independent sin 14 NA
450 423.36 radiation 1 43200 > th dose dependent rect. 5 1
463 423.56 radiation 10 43200 < th dose independent rect. 17 15
582 424.92 radiation 30 43200 < th dose dependent rect. 22 7
623 425.36 temperature 25 4320 > th dose independent rect. 9 2
638 425.51 radiation 1 270 < th dose dependent sin 15 NA
641 425.54 radiation 20 14400 > th dose dependent rect. 16 1
669 425.84 humidity 90 43200 < th dose independent rect. 23 1
690 426.01 humidity 90 43200 < th dose independent sin 14 NA
693 426.03 humidity 80 43200 > th dose independent rect. 12 1
824 427.85 temperature 25 4320 < th dose independent rect. 9 2
869 428.39 temperature 25 4320 > th dose independent rect. 5 7
875 428.42 temperature 25 4320 < th dose independent rect. 7 4
929 429.19 humidity 80 43200 < th dose independent rect. 13 1
939 429.28 radiation 1 43200 > th dose dependent rect. 18 13
976 429.57 radiation 40 14400 < th dose dependent rect. 18 8
998 429.84 radiation 40 43200 < th dose dependent rect. 5 1