BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0113900 Os06g0113900|AK120464
(585 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0113900 Conserved hypothetical protein 962 0.0
>Os06g0113900 Conserved hypothetical protein
Length = 585
Score = 962 bits (2487), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 492/585 (84%), Positives = 492/585 (84%)
Query: 1 MSEQPLPQPRSSMRXXXXXXXXXXXXXXXXXXXVPXXXXXXXXXXXXXXXXXXXXXXXXQ 60
MSEQPLPQPRSSMR VP Q
Sbjct: 1 MSEQPLPQPRSSMREALEKEDKEKAAAAKEKAAVPKNGGNGGGGKNGGGNGGGNGGAGAQ 60
Query: 61 PGEETTREIQXXXXXXXXXXXXXXXXMPEEPPAMVELVGWYLYGFCSYFITHLLLPVLFP 120
PGEETTREIQ MPEEPPAMVELVGWYLYGFCSYFITHLLLPVLFP
Sbjct: 61 PGEETTREIQVVREAYRREPAAPAYVMPEEPPAMVELVGWYLYGFCSYFITHLLLPVLFP 120
Query: 121 AIITQVAFPASDFTPDTKYIVKGATCSIHEMSMYQRLTKHSIAIDGSRLSPLGWSGLSWA 180
AIITQVAFPASDFTPDTKYIVKGATCSIHEMSMYQRLTKHSIAIDGSRLSPLGWSGLSWA
Sbjct: 121 AIITQVAFPASDFTPDTKYIVKGATCSIHEMSMYQRLTKHSIAIDGSRLSPLGWSGLSWA 180
Query: 181 IGILIAAPILTQAAHHLDRGQYQSLILIAATSFGSFFCLLTGFFKTVWVFLFYILFIGAS 240
IGILIAAPILTQAAHHLDRGQYQSLILIAATSFGSFFCLLTGFFKTVWVFLFYILFIGAS
Sbjct: 181 IGILIAAPILTQAAHHLDRGQYQSLILIAATSFGSFFCLLTGFFKTVWVFLFYILFIGAS 240
Query: 241 IIVAEAVHTRNLGLMIRGLAAHDSGKHLVLRRRAAASQLTLYCTXXXXXXXXLMAAFMYH 300
IIVAEAVHTRNLGLMIRGLAAHDSGKHLVLRRRAAASQLTLYCT LMAAFMYH
Sbjct: 241 IIVAEAVHTRNLGLMIRGLAAHDSGKHLVLRRRAAASQLTLYCTAIGGIGAALMAAFMYH 300
Query: 301 MLRRTDQLTGLWVVSIFSGLIWFIGICHGLFTNRPSSSSPTTAFEPNFFTKLSYSMTLVR 360
MLRRTDQLTGLWVVSIFSGLIWFIGICHGLFTNRPSSSSPTTAFEPNFFTKLSYSMTLVR
Sbjct: 301 MLRRTDQLTGLWVVSIFSGLIWFIGICHGLFTNRPSSSSPTTAFEPNFFTKLSYSMTLVR 360
Query: 361 YPQAIGSLVAVFLSSFATMCIFTSGTLYAIGGVCIKPVLVLVLWILYFLFPLISLPLLHP 420
YPQAIGSLVAVFLSSFATMCIFTSGTLYAIGGVCIKPVLVLVLWILYFLFPLISLPLLHP
Sbjct: 361 YPQAIGSLVAVFLSSFATMCIFTSGTLYAIGGVCIKPVLVLVLWILYFLFPLISLPLLHP 420
Query: 421 IQIIIRADAVRMQLLGFIICLFVSGAGFYFKSHRWRAAHIIVIALVQSTANGVLYSFGRI 480
IQIIIRADAVRMQLLGFIICLFVSGAGFYFKSHRWRAAHIIVIALVQSTANGVLYSFGRI
Sbjct: 421 IQIIIRADAVRMQLLGFIICLFVSGAGFYFKSHRWRAAHIIVIALVQSTANGVLYSFGRI 480
Query: 481 LLLDASPPGKEGAFAVWYAFVRCIGAMIXXXXXXXXXXXXXXXXXXXXXXXXXXIIVLIF 540
LLLDASPPGKEGAFAVWYAFVRCIGAMI IIVLIF
Sbjct: 481 LLLDASPPGKEGAFAVWYAFVRCIGAMIGFAAASAGPGRAGGSFAAAFLGSFLGIIVLIF 540
Query: 541 GNVSNIGALKAAGHLKGMEDEKRLGMEKGEGMSAVADSGEGRGRV 585
GNVSNIGALKAAGHLKGMEDEKRLGMEKGEGMSAVADSGEGRGRV
Sbjct: 541 GNVSNIGALKAAGHLKGMEDEKRLGMEKGEGMSAVADSGEGRGRV 585
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.329 0.142 0.442
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 16,382,530
Number of extensions: 594956
Number of successful extensions: 1670
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1667
Number of HSP's successfully gapped: 1
Length of query: 585
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 479
Effective length of database: 11,501,117
Effective search space: 5509035043
Effective search space used: 5509035043
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 159 (65.9 bits)