BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0106800 Os06g0106800|AK122178
         (499 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os06g0106800  Conserved hypothetical protein                      256   3e-68

>Os06g0106800 Conserved hypothetical protein
          Length = 499

 Score =  256 bits (654), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 174/325 (53%), Positives = 174/325 (53%)

Query: 26  EHVPGAELPRAHGVADGLRRRGRRHDVEHGGFQXXXXXXXXXXXXXXXXXXXXXXXXXXX 85
           EHVPGAELPRAHGVADGLRRRGRRHDVEHGGFQ                           
Sbjct: 26  EHVPGAELPRAHGVADGLRRRGRRHDVEHGGFQVGGGPPVAVLRRGRRRGDAVRAGGEVA 85

Query: 86  HWAVQPDEPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDRRVQPXX 145
           HWAVQPDEPL                                          DRRVQP  
Sbjct: 86  HWAVQPDEPLHPVPPQRRRHPGVPGHGRVAHHRSPPVVRPRPRQGRRPVREPDRRVQPDG 145

Query: 146 XXXXXXXXXXXXXXXXVVVQVPFEQAQVHAWVPDRGDALGHGGDIERDAGELAGVEHPPG 205
                           VVVQVPFEQAQVHAWVPDRGDALGHGGDIERDAGELAGVEHPPG
Sbjct: 146 RGDHRRERDDRRAGGDVVVQVPFEQAQVHAWVPDRGDALGHGGDIERDAGELAGVEHPPG 205

Query: 206 VQQQHRGAGGDDPGTDALAQHRRHQPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 265
           VQQQHRGAGGDDPGTDALAQHRRHQP                                  
Sbjct: 206 VQQQHRGAGGDDPGTDALAQHRRHQPGLVLPRPHRGLLHRVRRRLRGDQVRVGRVRDRVR 265

Query: 266 DAQPAHRGAEADVRVADERGDRAGQRDVGRDQRRAXXXXXXXXXXXXXXXXXXXXXXXXX 325
           DAQPAHRGAEADVRVADERGDRAGQRDVGRDQRRA                         
Sbjct: 266 DAQPAHRGAEADVRVADERGDRAGQRDVGRDQRRAGGGHNGGELGVGGADQDGGGAWGVR 325

Query: 326 XXXXXPGDVAGHHEVGVLDDGELQV 350
                PGDVAGHHEVGVLDDGELQV
Sbjct: 326 ARRVRPGDVAGHHEVGVLDDGELQV 350



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.318    0.140    0.440 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,442,649
Number of extensions: 268294
Number of successful extensions: 890
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 887
Number of HSP's successfully gapped: 2
Length of query: 499
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 394
Effective length of database: 11,553,331
Effective search space: 4552012414
Effective search space used: 4552012414
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 158 (65.5 bits)