Os06g0106800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os06g0106800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 410.79 | 0.952 | 10.9 | -0.818 | 4.07 | 3.71 | 2.87 | 3 | -0.666 | 3 | 30.19 | 14 | 19 | -- |
| 419.86 | 0.954 | 10.9 | -0.598 | 4.16 | 3.44 | 2.29 | -- | -0.635 | 3.02 | 30.59 | 13 | 19 | -- |
| 435.36 | 0.972 | 10.9 | -0.793 | 4.15 | 3.9 | -- | 1.9 | -0.648 | 2.92 | 30.5 | 13 | 19.1 | -- |
| 436.56 | 0.973 | 10.9 | -0.612 | 4.27 | 3.72 | -- | -- | -0.638 | 2.95 | 30.9 | 14 | 18.8 | -- |
| 496.97 | 1.04 | 10.9 | -1.05 | -- | 4.85 | -- | 4.61 | -0.785 | -- | 47.62 | 173 | 3.37 | -- |
| 504.89 | 1.05 | 10.9 | -1.09 | 4.16 | -- | 3.35 | -- | -0.956 | 3.9 | -- | -- | -- | -- |
| 537.7 | 1.09 | 10.9 | -1.13 | 4.18 | -- | -- | -- | -0.975 | 3.93 | -- | -- | -- | -- |
| 529.58 | 1.07 | 10.9 | -0.998 | -- | 4.62 | -- | -- | -0.82 | -- | 67.77 | 144 | 3.14 | -- |
| 446.06 | 0.984 | 10.9 | -- | 4.21 | 3.93 | -- | -- | -0.565 | 2.85 | 30.9 | 14 | 18.9 | -- |
| 1496.1 | 1.81 | 10.9 | -0.963 | -- | -- | -- | -- | -0.863 | -- | -- | -- | -- | -- |
| 571.62 | 1.12 | 10.9 | -- | 4.16 | -- | -- | -- | -0.848 | 3.93 | -- | -- | -- | -- |
| 552.49 | 1.09 | 10.9 | -- | -- | 4.83 | -- | -- | -0.632 | -- | 51.61 | 62 | 2.29 | -- |
| 1520.54 | 1.82 | 10.9 | -- | -- | -- | -- | -- | -0.756 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 405.10 | temperature | 30 | 90 | < th | dose dependent | rect. | 2 | 16 |
| 3 | 405.27 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 16 |
| 13 | 406.68 | temperature | 30 | 10 | < th | dose dependent | rect. | 2 | 17 |
| 27 | 410.78 | temperature | 10 | 270 | > th | dose dependent | rect. | 5 | 10 |
| 29 | 411.31 | temperature | 30 | 10 | < th | dose dependent | sin | 1 | NA |
| 30 | 411.65 | temperature | 30 | 10 | < th | dose dependent | rect. | 2 | 14 |
| 34 | 412.17 | temperature | 30 | 10 | < th | dose dependent | rect. | 2 | 19 |
| 52 | 415.28 | temperature | 15 | 10 | > th | dose dependent | sin | 1 | NA |
| 63 | 416.29 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 18 |
| 121 | 421.09 | temperature | 25 | 270 | > th | dose independent | rect. | 6 | 8 |
| 168 | 423.10 | temperature | 25 | 270 | < th | dose independent | rect. | 1 | 15 |
| 237 | 427.10 | temperature | 15 | 10 | > th | dose dependent | rect. | 7 | 19 |
| 303 | 430.21 | radiation | 10 | 14400 | < th | dose dependent | rect. | 22 | 5 |
| 429 | 434.83 | temperature | 20 | 90 | > th | dose dependent | rect. | 22 | 17 |
| 441 | 435.38 | temperature | 15 | 10 | > th | dose dependent | rect. | 23 | 16 |
| 470 | 436.30 | temperature | 10 | 270 | > th | dose dependent | rect. | 20 | 15 |
| 483 | 436.61 | temperature | 25 | 270 | > th | dose independent | sin | 3 | NA |
| 484 | 436.63 | temperature | 25 | 90 | > th | dose independent | sin | 1 | NA |
| 515 | 437.49 | temperature | 25 | 270 | < th | dose independent | sin | 3 | NA |
| 529 | 437.86 | temperature | 25 | 90 | < th | dose independent | sin | 1 | NA |
| 556 | 438.51 | temperature | 25 | 720 | < th | dose dependent | rect. | 5 | 7 |
| 625 | 439.43 | temperature | 20 | 720 | > th | dose dependent | rect. | 5 | 3 |
| 647 | 439.72 | wind | 5 | 270 | < th | dose independent | rect. | 5 | 20 |
| 725 | 440.59 | wind | 5 | 270 | < th | dose independent | rect. | 6 | 18 |
| 807 | 441.59 | temperature | 30 | 10 | < th | dose independent | rect. | 2 | 19 |
| 817 | 441.75 | wind | 5 | 14400 | > th | dose independent | rect. | 15 | 14 |
| 827 | 441.86 | temperature | 15 | 270 | > th | dose dependent | rect. | 19 | 20 |
| 889 | 442.57 | wind | 5 | 14400 | < th | dose independent | rect. | 15 | 14 |
| 939 | 443.13 | temperature | 30 | 10 | < th | dose independent | rect. | 2 | 21 |
| 940 | 443.13 | radiation | 1 | 14400 | < th | dose dependent | rect. | 24 | 1 |