BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0104400 Os06g0104400|AK060638
         (319 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os06g0104400  IQ calmodulin-binding region domain containing...   364   e-101
Os02g0105500  IQ calmodulin-binding region domain containing...   171   5e-43

>Os06g0104400 IQ calmodulin-binding region domain containing protein
          Length = 319

 Score =  364 bits (934), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 198/319 (62%), Positives = 198/319 (62%)

Query: 1   MSSHHRYAHLLDDXXXXXXXXXXXXXXXXXXXXXXXTCPFFALDSPFAAXXXXXXXXXXX 60
           MSSHHRYAHLLDD                       TCPFFALDSPFAA           
Sbjct: 1   MSSHHRYAHLLDDPFFPFPPPSSSSCPFLSPPAASSTCPFFALDSPFAADPFHLHPFLPT 60

Query: 61  XXXXXXXXXXXXHTLTDRVSQLEXXXXXXXXXXXXTSRKCTYVTESTGRKVKWTTEDKPR 120
                       HTLTDRVSQLE            TSRKCTYVTESTGRKVKWTTEDKPR
Sbjct: 61  PPTSSLLDPFLLHTLTDRVSQLELALAARAPHPRPTSRKCTYVTESTGRKVKWTTEDKPR 120

Query: 121 AGERVLKWEAELDSPYDDGFDRXXXXXXXXXXXXXXXXXXXXXXHLKGKGCLEPWSHSYT 180
           AGERVLKWEAELDSPYDDGFDR                      HLKGKGCLEPWSHSYT
Sbjct: 121 AGERVLKWEAELDSPYDDGFDRKWKWEAKAKTASAAATKLKWATHLKGKGCLEPWSHSYT 180

Query: 181 WXXXXXXXXXXXXXXXXXQLHHKALQDHSXXXXXXXXXXXXXXXXXXXXXXXXEQKKCPF 240
           W                 QLHHKALQDHS                        EQKKCPF
Sbjct: 181 WEEDFSATDDDDDEEIEDQLHHKALQDHSKLKTKAKDDKKKKKKDNNTVVVNKEQKKCPF 240

Query: 241 SVKIEEIPPEEDNTAGCVAIRKAFALGNGKAKKKELSPQDAALLIQLNYRAHLAHRSQVL 300
           SVKIEEIPPEEDNTAGCVAIRKAFALGNGKAKKKELSPQDAALLIQLNYRAHLAHRSQVL
Sbjct: 241 SVKIEEIPPEEDNTAGCVAIRKAFALGNGKAKKKELSPQDAALLIQLNYRAHLAHRSQVL 300

Query: 301 RCLRDLAVAKAKLKEIRCA 319
           RCLRDLAVAKAKLKEIRCA
Sbjct: 301 RCLRDLAVAKAKLKEIRCA 319



>Os02g0105500 IQ calmodulin-binding region domain containing protein
          Length = 398

 Score =  171 bits (434), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 113/247 (45%), Positives = 129/247 (52%), Gaps = 36/247 (14%)

Query: 73  HTLTDRVSQLEXXXXXXXXXXXXTSRKCTYVTESTGRKVKWTTEDKPRAGERVLKWEAEL 132
           H+L  RVS LE               K TY  ES GRK+KWTT DKP  G+R  KWEA++
Sbjct: 107 HSLAHRVSALELAAPRS---------KYTYEAESAGRKIKWTTHDKPD-GDRTFKWEAQI 156

Query: 133 DSPYDDGFDRXXXXXXXXXXXXXXXXXXXXXXHLKGKGCLEPWSHSYTWXXXXXXXXXXX 192
           D+P DDGFDR                       +KGKG L PWSH+Y+            
Sbjct: 157 DTPNDDGFDRKWKWESKASAAGTTKLKWAK--EVKGKGFLHPWSHAYS----------VE 204

Query: 193 XXXXXXQLHHKALQDHSXXXXXXXXXXXXXXXXXXXXXXXXEQKKCPFS-VKIEEIPPEE 251
                   HHKA                             E+KK   S V+I EI   +
Sbjct: 205 EVFGDDDHHHKA----------DKTAENKVKQHNKDTSAKEEKKKTNKSNVQIVEI---D 251

Query: 252 DNTAGCVAIRKAFALGNGKAKKKELSPQDAALLIQLNYRAHLAHRSQVLRCLRDLAVAKA 311
           DNTAGCVAI KAFA    K K+K+LSPQDAALLIQ+NYRAHLAHRSQVLRCLR LAVAKA
Sbjct: 252 DNTAGCVAINKAFASSYAKGKRKQLSPQDAALLIQMNYRAHLAHRSQVLRCLRHLAVAKA 311

Query: 312 KLKEIRC 318
           KLK+IR 
Sbjct: 312 KLKDIRS 318



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.318    0.132    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,037,063
Number of extensions: 201314
Number of successful extensions: 326
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 319
Number of HSP's successfully gapped: 3
Length of query: 319
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 218
Effective length of database: 11,762,187
Effective search space: 2564156766
Effective search space used: 2564156766
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 156 (64.7 bits)