BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0103700 Os06g0103700|AK070147
         (342 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os06g0103700  Similar to Glutamine cyclotransferase precurso...   540   e-154

>Os06g0103700 Similar to Glutamine cyclotransferase precursor (EC 2.3.2.5)
          Length = 342

 Score =  540 bits (1391), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 261/277 (94%), Positives = 261/277 (94%)

Query: 66  HPYGYXXXXXXXXXXXXXXXXVSTTFYSFDLLREYPHDPYAFTQGLLYGGNDTFFESTGL 125
           HPYGY                VSTTFYSFDLLREYPHDPYAFTQGLLYGGNDTFFESTGL
Sbjct: 66  HPYGYAPWLANAAPAALLRRPVSTTFYSFDLLREYPHDPYAFTQGLLYGGNDTFFESTGL 125

Query: 126 YHRSSVRRVDLKTGKVLVQHEMDGRLFGEGLTLLNDKLFQVVWMKNQGFIYDRHNFSKRE 185
           YHRSSVRRVDLKTGKVLVQHEMDGRLFGEGLTLLNDKLFQVVWMKNQGFIYDRHNFSKRE
Sbjct: 126 YHRSSVRRVDLKTGKVLVQHEMDGRLFGEGLTLLNDKLFQVVWMKNQGFIYDRHNFSKRE 185

Query: 186 SFTHKMSDGWGLATDGKVLFGSDGTSRLYQLDPKSIQVMKTVTVKYQDNEVPYLNELEYI 245
           SFTHKMSDGWGLATDGKVLFGSDGTSRLYQLDPKSIQVMKTVTVKYQDNEVPYLNELEYI
Sbjct: 186 SFTHKMSDGWGLATDGKVLFGSDGTSRLYQLDPKSIQVMKTVTVKYQDNEVPYLNELEYI 245

Query: 246 NGEVWANVWQTDCIARVSHEDGLVVGWIFLHELRQHLWNSGNTEIDVLNGIAWDEENQRL 305
           NGEVWANVWQTDCIARVSHEDGLVVGWIFLHELRQHLWNSGNTEIDVLNGIAWDEENQRL
Sbjct: 246 NGEVWANVWQTDCIARVSHEDGLVVGWIFLHELRQHLWNSGNTEIDVLNGIAWDEENQRL 305

Query: 306 FVTGKLWPKIYEIKLRPVDGPQDGSVEKLCPKASFYR 342
           FVTGKLWPKIYEIKLRPVDGPQDGSVEKLCPKASFYR
Sbjct: 306 FVTGKLWPKIYEIKLRPVDGPQDGSVEKLCPKASFYR 342



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.320    0.139    0.443 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,786,903
Number of extensions: 416078
Number of successful extensions: 737
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 737
Number of HSP's successfully gapped: 1
Length of query: 342
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 240
Effective length of database: 11,709,973
Effective search space: 2810393520
Effective search space used: 2810393520
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 156 (64.7 bits)