BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0102600 Os06g0102600|J065187I04
(209 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0102600 Hypothetical protein 327 3e-90
Os11g0580800 Twin-arginine translocation protein TatB famil... 134 5e-32
AK120313 83 2e-16
>Os06g0102600 Hypothetical protein
Length = 209
Score = 327 bits (839), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 166/209 (79%), Positives = 166/209 (79%)
Query: 1 AAYTLRIESNSKPTAGDGHRRPATPTSSVRRHVHSSFPFPFLTVEEAEAHPRPAXXXXXX 60
AAYTLRIESNSKPTAGDGHRRPATPTSSVRRHVHSSFPFPFLTVEEAEAHPRPA
Sbjct: 1 AAYTLRIESNSKPTAGDGHRRPATPTSSVRRHVHSSFPFPFLTVEEAEAHPRPALLRGRS 60
Query: 61 XXXXXXXXXXXXXYGEQKNKSWNWCLRFFIXXXXXXXXXXXXXXXXXLWSQRTSRGSDDK 120
YGEQKNKSWNWCLRFFI LWSQRTSRGSDDK
Sbjct: 61 ILRLRPPSPPPPSYGEQKNKSWNWCLRFFIWSWSSRSSGYWSGCSVSLWSQRTSRGSDDK 120
Query: 121 PEAAPYTSEELMKVIEEQLXXXXXXXWNTQEPPPSQQKGCDIFFVPVLQLEAAATSESND 180
PEAAPYTSEELMKVIEEQL WNTQEPPPSQQKGCDIFFVPVLQLEAAATSESND
Sbjct: 121 PEAAPYTSEELMKVIEEQLAASAAAAWNTQEPPPSQQKGCDIFFVPVLQLEAAATSESND 180
Query: 181 GAISRGSDGAGAAMSEPNRNISEKTETER 209
GAISRGSDGAGAAMSEPNRNISEKTETER
Sbjct: 181 GAISRGSDGAGAAMSEPNRNISEKTETER 209
>Os11g0580800 Twin-arginine translocation protein TatB family protein
Length = 247
Score = 134 bits (337), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 72/93 (77%), Positives = 73/93 (78%), Gaps = 12/93 (12%)
Query: 117 SDDKPEAAPYTSEELMKVIEEQLXXXXXXXWNTQEPPPSQQKGCDIFFVPVLQLEAAATS 176
SDDKPEAAPYTSEEL+KV EEQL WNTQEPPPSQQK EAAATS
Sbjct: 167 SDDKPEAAPYTSEELIKVTEEQLAASAAAAWNTQEPPPSQQK------------EAAATS 214
Query: 177 ESNDGAISRGSDGAGAAMSEPNRNISEKTETER 209
ESNDGAISRGSDGAGAAMSEPNRNISEKTETER
Sbjct: 215 ESNDGAISRGSDGAGAAMSEPNRNISEKTETER 247
>AK120313
Length = 409
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/91 (54%), Positives = 56/91 (61%), Gaps = 13/91 (14%)
Query: 114 SRGSDDKPEAAPYTSEELMKVIEEQLXXXXXXXWNTQEPPPSQQKGCDIFFVPVLQLEAA 173
++GSDDKPEAAPYTSEEL+KV EEQL WNTQEPPPSQQK EAA
Sbjct: 2 TKGSDDKPEAAPYTSEELIKVTEEQLAASAAAAWNTQEPPPSQQK------------EAA 49
Query: 174 ATSESNDGAISRGSDGAGAAMSEPNRNISEK 204
ATSESND + G D +G P + S K
Sbjct: 50 ATSESNDDGGAYG-DASGDDGRAPGGDSSGK 79
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.311 0.126 0.382
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,816,922
Number of extensions: 251797
Number of successful extensions: 555
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 551
Number of HSP's successfully gapped: 3
Length of query: 209
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 113
Effective length of database: 12,023,257
Effective search space: 1358628041
Effective search space used: 1358628041
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 154 (63.9 bits)