Os06g0102600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
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Os06g0102600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 76.01 | 0.41 | 11.9 | -0.873 | 1.18 | -0.664 | 1.71 | 2.06 | -0.512 | 20.1 | 9.999 | 766 | -- | -- |
| 80.47 | 0.418 | 11.9 | -0.9 | 1.15 | -0.73 | 0.737 | -- | -0.53 | 20.3 | 10 | 751 | -- | -- |
| 82.01 | 0.425 | 11.9 | -0.88 | 1.72 | -0.194 | -- | 0.786 | -0.441 | 19.9 | 9.999 | 766 | -- | -- |
| 82.02 | 0.422 | 11.9 | -0.907 | 1.14 | -0.745 | -- | -- | -0.531 | 20.2 | 9.99 | 751 | -- | -- |
| 116.93 | 0.504 | 11.7 | -0.573 | -- | -1.78 | -- | -0.716 | -0.286 | -- | 5.57 | 890 | -- | -- |
| 85.91 | 0.435 | 11.9 | -0.946 | 1.63 | -- | 0.641 | -- | -0.471 | 19.6 | -- | -- | -- | -- |
| 87.03 | 0.437 | 11.9 | -0.96 | 1.63 | -- | -- | -- | -0.47 | 19.5 | -- | -- | -- | -- |
| 95.06 | 0.454 | 11.9 | -1.05 | -- | -2.12 | -- | -- | -0.572 | -- | 3.661 | 873 | -- | -- |
| 104.23 | 0.476 | 11.9 | -- | 1.1 | -0.859 | -- | -- | -0.451 | 20.3 | 9.86 | 749 | -- | -- |
| 228.77 | 0.707 | 11.9 | -0.985 | -- | -- | -- | -- | -0.495 | -- | -- | -- | -- | -- |
| 111.34 | 0.494 | 11.9 | -- | 1.64 | -- | -- | -- | -0.363 | 19.5 | -- | -- | -- | -- |
| 121.21 | 0.513 | 11.9 | -- | -- | -2.08 | -- | -- | -0.49 | -- | 5.96 | 890 | -- | -- |
| 254.35 | 0.744 | 11.8 | -- | -- | -- | -- | -- | -0.386 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 73.18 | radiation | 30 | 270 | < th | dose independent | rect. | 10 | 21 |
| 2 | 73.26 | temperature | 20 | 720 | > th | dose dependent | rect. | 19 | 13 |
| 9 | 73.72 | wind | 1 | 43200 | < th | dose independent | rect. | 19 | 7 |
| 11 | 73.84 | wind | 1 | 43200 | > th | dose independent | rect. | 20 | 6 |
| 16 | 74.02 | temperature | 20 | 720 | > th | dose dependent | sin | 11 | NA |
| 28 | 74.37 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 1 |
| 32 | 74.48 | radiation | 1 | 1440 | < th | dose dependent | rect. | 24 | 5 |
| 42 | 74.71 | temperature | 20 | 1440 | > th | dose dependent | rect. | 5 | 3 |
| 45 | 74.77 | radiation | 40 | 270 | < th | dose dependent | rect. | 10 | 21 |
| 46 | 74.81 | wind | 3 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 48 | 74.87 | wind | 1 | 43200 | < th | dose dependent | rect. | 19 | 7 |
| 49 | 74.88 | radiation | 10 | 270 | < th | dose independent | rect. | 1 | 22 |
| 61 | 75.01 | humidity | 90 | 43200 | > th | dose dependent | rect. | 1 | 14 |
| 66 | 75.05 | radiation | 40 | 90 | < th | dose independent | rect. | 4 | 19 |
| 70 | 75.08 | radiation | 40 | 90 | < th | dose independent | rect. | 4 | 11 |
| 72 | 75.08 | humidity | 90 | 43200 | > th | dose dependent | rect. | 3 | 6 |
| 73 | 75.08 | humidity | 90 | 43200 | > th | dose dependent | rect. | 2 | 10 |
| 79 | 75.10 | radiation | 40 | 14400 | < th | dose dependent | rect. | 24 | 5 |
| 81 | 75.11 | radiation | 40 | 270 | < th | dose independent | rect. | 2 | 13 |
| 87 | 75.14 | humidity | 90 | 43200 | > th | dose dependent | sin | 5 | NA |
| 97 | 75.20 | humidity | 90 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 109 | 75.26 | temperature | 20 | 1440 | > th | dose dependent | rect. | 21 | 1 |
| 118 | 75.28 | radiation | 10 | 720 | < th | dose independent | rect. | 19 | 20 |
| 125 | 75.29 | humidity | 80 | 14400 | > th | dose independent | rect. | 2 | 2 |
| 126 | 75.29 | radiation | 10 | 720 | < th | dose independent | rect. | 4 | 19 |
| 172 | 75.40 | radiation | 1 | 1440 | < th | dose dependent | rect. | 19 | 10 |
| 180 | 75.41 | temperature | 25 | 720 | < th | dose independent | rect. | 19 | 16 |
| 203 | 75.46 | wind | 1 | 43200 | < th | dose dependent | rect. | 20 | 2 |
| 212 | 75.49 | radiation | 10 | 720 | < th | dose independent | rect. | 19 | 18 |
| 225 | 75.51 | radiation | 10 | 720 | < th | dose independent | rect. | 19 | 16 |
| 253 | 75.55 | radiation | 20 | 90 | < th | dose independent | rect. | 4 | 23 |
| 269 | 75.58 | humidity | 90 | 43200 | > th | dose dependent | no | NA | NA |
| 275 | 75.58 | humidity | 90 | 43200 | > th | dose dependent | rect. | 10 | 23 |
| 284 | 75.59 | humidity | 90 | 43200 | > th | dose dependent | rect. | 7 | 23 |
| 286 | 75.59 | humidity | 90 | 43200 | > th | dose dependent | rect. | 13 | 23 |
| 341 | 75.67 | humidity | 90 | 43200 | > th | dose dependent | rect. | 5 | 23 |
| 356 | 75.71 | radiation | 1 | 4320 | < th | dose dependent | rect. | 5 | 1 |
| 371 | 75.73 | radiation | 40 | 43200 | < th | dose independent | rect. | 16 | 13 |
| 414 | 75.79 | humidity | 90 | 43200 | > th | dose independent | rect. | 21 | 17 |
| 429 | 75.82 | wind | 1 | 43200 | < th | dose independent | rect. | 19 | 3 |
| 438 | 75.83 | humidity | 90 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 471 | 75.87 | humidity | 90 | 43200 | > th | dose independent | sin | 5 | NA |
| 485 | 75.89 | humidity | 90 | 43200 | > th | dose independent | rect. | 24 | 14 |
| 503 | 75.91 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 1 |
| 520 | 75.93 | wind | 3 | 43200 | > th | dose independent | rect. | 11 | 3 |
| 527 | 75.93 | humidity | 90 | 43200 | > th | dose independent | rect. | 3 | 23 |
| 528 | 75.93 | humidity | 90 | 43200 | > th | dose independent | rect. | 5 | 23 |
| 556 | 75.96 | wind | 1 | 43200 | > th | dose independent | rect. | 19 | 3 |
| 563 | 75.97 | humidity | 90 | 43200 | > th | dose independent | no | NA | NA |
| 592 | 75.99 | humidity | 90 | 43200 | > th | dose independent | rect. | 24 | 23 |
| 606 | 76.01 | wind | 3 | 43200 | < th | dose independent | rect. | 11 | 3 |
| 641 | 76.05 | radiation | 10 | 270 | < th | dose independent | rect. | 13 | 19 |
| 647 | 76.05 | wind | 1 | 43200 | < th | dose dependent | rect. | 23 | 2 |
| 674 | 76.08 | humidity | 90 | 43200 | > th | dose independent | rect. | 3 | 8 |
| 676 | 76.08 | humidity | 90 | 43200 | < th | dose independent | rect. | 8 | 19 |
| 678 | 76.08 | humidity | 90 | 43200 | < th | dose independent | rect. | 5 | 22 |
| 710 | 76.12 | humidity | 90 | 43200 | < th | dose independent | rect. | 10 | 16 |
| 755 | 76.16 | radiation | 30 | 10 | < th | dose independent | rect. | 5 | 18 |
| 758 | 76.17 | temperature | 25 | 270 | < th | dose independent | sin | 5 | NA |
| 773 | 76.19 | wind | 1 | 43200 | > th | dose independent | rect. | 9 | 3 |
| 790 | 76.21 | humidity | 80 | 14400 | < th | dose independent | rect. | 2 | 2 |
| 807 | 76.23 | radiation | 30 | 10 | < th | dose independent | rect. | 4 | 23 |
| 809 | 76.23 | wind | 1 | 43200 | < th | dose dependent | sin | 16 | NA |
| 810 | 76.23 | humidity | 90 | 14400 | < th | dose dependent | rect. | 4 | 1 |
| 815 | 76.24 | humidity | 90 | 43200 | < th | dose independent | rect. | 17 | 23 |
| 826 | 76.25 | humidity | 90 | 43200 | < th | dose independent | rect. | 17 | 21 |
| 827 | 76.25 | radiation | 10 | 270 | < th | dose independent | rect. | 13 | 21 |
| 841 | 76.27 | humidity | 90 | 43200 | < th | dose independent | no | NA | NA |
| 843 | 76.27 | temperature | 25 | 1440 | < th | dose independent | rect. | 16 | 19 |
| 858 | 76.28 | humidity | 90 | 43200 | < th | dose independent | rect. | 22 | 23 |
| 869 | 76.29 | humidity | 90 | 43200 | < th | dose independent | rect. | 20 | 23 |
| 871 | 76.29 | humidity | 90 | 43200 | < th | dose independent | rect. | 24 | 23 |
| 875 | 76.30 | humidity | 80 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 885 | 76.31 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 893 | 76.31 | radiation | 10 | 720 | < th | dose independent | rect. | 4 | 23 |
| 901 | 76.32 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 8 |
| 915 | 76.32 | radiation | 40 | 14400 | < th | dose dependent | rect. | 19 | 10 |
| 927 | 76.34 | radiation | 10 | 720 | < th | dose independent | sin | 10 | NA |
| 937 | 76.35 | humidity | 90 | 43200 | < th | dose independent | sin | 17 | NA |
| 972 | 76.37 | humidity | 90 | 43200 | > th | dose independent | rect. | 18 | 7 |
| 992 | 76.39 | humidity | 90 | 43200 | > th | dose independent | sin | 17 | NA |
| 993 | 76.39 | radiation | 10 | 270 | < th | dose independent | sin | 4 | NA |
| 995 | 76.39 | humidity | 90 | 43200 | < th | dose independent | rect. | 14 | 11 |
| 1000 | 76.39 | radiation | 40 | 90 | < th | dose independent | rect. | 4 | 23 |