BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0597400 Os05g0597400|Os05g0597400
         (577 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os05g0597400  Conserved hypothetical protein                      987   0.0  
Os02g0771800  Hypothetical protein                                190   2e-48

>Os05g0597400 Conserved hypothetical protein
          Length = 577

 Score =  987 bits (2551), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 501/577 (86%), Positives = 501/577 (86%)

Query: 1   MEALPDIYPLTGLQIGDMQSYVSRAFLYFAPLSKKVFILVDNQPWRSSKQSRSARLWQFM 60
           MEALPDIYPLTGLQIGDMQSYVSRAFLYFAPLSKKVFILVDNQPWRSSKQSRSARLWQFM
Sbjct: 1   MEALPDIYPLTGLQIGDMQSYVSRAFLYFAPLSKKVFILVDNQPWRSSKQSRSARLWQFM 60

Query: 61  VTKYRMSPFANSRALPCSGRNXXXXXXXXXXXXDGECSMAARRWFEVVDLRLALHGFLVF 120
           VTKYRMSPFANSRALPCSGRN            DGECSMAARRWFEVVDLRLALHGFLVF
Sbjct: 61  VTKYRMSPFANSRALPCSGRNTSSATAAAAAAADGECSMAARRWFEVVDLRLALHGFLVF 120

Query: 121 EVSWRDVHGINYLNELLTDTSLALEARYMKKWEFYSAEQAAGCTKLWFLGRAPEAEALRG 180
           EVSWRDVHGINYLNELLTDTSLALEARYMKKWEFYSAEQAAGCTKLWFLGRAPEAEALRG
Sbjct: 121 EVSWRDVHGINYLNELLTDTSLALEARYMKKWEFYSAEQAAGCTKLWFLGRAPEAEALRG 180

Query: 181 YLTTLYSLSQXXXXXXXXXXXXXINTSTSNMRRLIHQQIRRXXXXXXXXXXXXXXXXXXX 240
           YLTTLYSLSQ             INTSTSNMRRLIHQQIRR                   
Sbjct: 181 YLTTLYSLSQDNVVDNDDKDNNNINTSTSNMRRLIHQQIRRSSSSESDKKKEDADDEDDQ 240

Query: 241 XXXXXXXYTDTLILLRSRDSALPMKLRQIIMSDIRLLTLLESGLPSWVIFLQSYPLLCLL 300
                  YTDTLILLRSRDSALPMKLRQIIMSDIRLLTLLESGLPSWVIFLQSYPLLCLL
Sbjct: 241 APSSSSSYTDTLILLRSRDSALPMKLRQIIMSDIRLLTLLESGLPSWVIFLQSYPLLCLL 300

Query: 301 YRPWMRPLARTLYLLVSLATVIIGFYDLYKNVPLLKAAAARVCGPLFGWIETWDMVTRIQ 360
           YRPWMRPLARTLYLLVSLATVIIGFYDLYKNVPLLKAAAARVCGPLFGWIETWDMVTRIQ
Sbjct: 301 YRPWMRPLARTLYLLVSLATVIIGFYDLYKNVPLLKAAAARVCGPLFGWIETWDMVTRIQ 360

Query: 361 YLGTILFLRNHLRKCLQGMVALLRMARAVLRPLSAPLSAIAGPLLAACGEVCELLGDLAE 420
           YLGTILFLRNHLRKCLQGMVALLRMARAVLRPLSAPLSAIAGPLLAACGEVCELLGDLAE
Sbjct: 361 YLGTILFLRNHLRKCLQGMVALLRMARAVLRPLSAPLSAIAGPLLAACGEVCELLGDLAE 420

Query: 421 ALWAPLDAVLDCXXXXXXXXXXXXRFXXXXXXXXXXXXXNTYNFGKDIWETVSSMFELNH 480
           ALWAPLDAVLDC            RF             NTYNFGKDIWETVSSMFELNH
Sbjct: 421 ALWAPLDAVLDCLNPLVQALLLPLRFAASLASCAGSLLSNTYNFGKDIWETVSSMFELNH 480

Query: 481 MAEAQHSAFDVSLLKSLWNDLFSQIFRAIRSILNGILLFFASCNRHRLSIYNHVQARLRH 540
           MAEAQHSAFDVSLLKSLWNDLFSQIFRAIRSILNGILLFFASCNRHRLSIYNHVQARLRH
Sbjct: 481 MAEAQHSAFDVSLLKSLWNDLFSQIFRAIRSILNGILLFFASCNRHRLSIYNHVQARLRH 540

Query: 541 MLHVSRLAPYSCPCKTKRRLEGHDKDEDDVVECDICK 577
           MLHVSRLAPYSCPCKTKRRLEGHDKDEDDVVECDICK
Sbjct: 541 MLHVSRLAPYSCPCKTKRRLEGHDKDEDDVVECDICK 577



>Os02g0771800 Hypothetical protein
          Length = 363

 Score =  190 bits (483), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 92/158 (58%), Positives = 115/158 (72%), Gaps = 4/158 (2%)

Query: 248 YTDTLILLRSRDSALPMKLRQIIMSDIRLLTLLESGLPSWVIFLQSYPLLCLLYRPWMRP 307
           Y D LIL R  D  LP +L+++I+SD+RLLTLLE GLPSWVIFLQSYP+ C  YRPWM P
Sbjct: 125 YKDVLILFRFDDHDLPFRLKEVILSDVRLLTLLEYGLPSWVIFLQSYPVFCKTYRPWMCP 184

Query: 308 LARTLYLLVSLATVIIGFYDLYKNVPLLKAAAARVCGPLFGWIETWDMVTRIQYLGTILF 367
           LAR LY+L+S+ TV+IGFYDLYKNVP+LKA A+R+ GP F WIETW+M++R++YLGT+LF
Sbjct: 185 LARALYVLMSIVTVLIGFYDLYKNVPMLKATASRLFGPFFDWIETWEMISRLKYLGTMLF 244

Query: 368 LRNHLRKCLQGMVALLRMARAVLRPLSAPLSAIAGPLL 405
           L N      Q     L++  A    LS     I GP+L
Sbjct: 245 LHNF----QQAFTWSLKIVTATKSALSVLTKPIMGPIL 278



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.327    0.139    0.437 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 15,540,419
Number of extensions: 518950
Number of successful extensions: 1544
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1543
Number of HSP's successfully gapped: 2
Length of query: 577
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 471
Effective length of database: 11,501,117
Effective search space: 5417026107
Effective search space used: 5417026107
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 159 (65.9 bits)