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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0597400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.32 (0.0201) R2 : 0.00453
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0608 (0.0422) R2dN8 : 0.00585 R2N8 : 0.00453
σ : 0.378
deviance : 65.46
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
59.48 0.362 3.33 0.247 0.254 -0.247 0.118 -1.14 -0.0831 7.97 41.04 4891 -- --
61.15 0.364 3.32 0.193 0.256 -0.248 -0.0371 -- -0.0926 8.06 31.4 8035 -- --
59.52 0.359 3.33 0.248 0.254 -0.248 -- -1.1 -0.0842 7.83 39.42 4848 -- --
61.12 0.364 3.33 0.18 0.247 -0.259 -- -- -0.111 8.06 37.89 8035 -- --
62.22 0.367 3.33 0.256 -- -0.192 -- -1.15 -0.0662 -- 44 5854 -- --
62.19 0.37 3.31 0.144 0.223 -- -0.0185 -- -0.0476 7.94 -- -- -- --
62.19 0.369 3.31 0.143 0.223 -- -- -- -0.0476 7.96 -- -- -- --
63.5 0.371 3.34 0.193 -- -0.293 -- -- -0.151 -- 80 7265 -- --
61.81 0.366 3.33 -- 0.251 -0.268 -- -- -0.127 7.66 35.77 4785 -- --
64.9 0.376 3.32 0.145 -- -- -- -- -0.0447 -- -- -- -- --
62.73 0.371 3.32 -- 0.224 -- -- -- -0.0635 7.92 -- -- -- --
64.44 0.374 3.34 -- -- -0.237 -- -- -0.145 -- 79 7251 -- --
65.46 0.378 3.32 -- -- -- -- -- -0.0608 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 51.96 wind 1.0 10 < th dose dependent rect. 9 1
3 52.33 wind 1.0 10 < th dose independent rect. 9 1
9 53.20 radiation 10.0 10 < th dose independent rect. 9 1
15 53.32 radiation 10.0 10 < th dose dependent rect. 10 1
59 57.08 atmosphere 1000.0 30 > th dose independent rect. 3 23
60 57.09 atmosphere 1005.0 10 > th dose dependent rect. 2 2
61 57.17 atmosphere 1005.0 90 > th dose dependent rect. 2 1
69 57.40 radiation 10.0 30 > th dose independent rect. 7 1
73 57.48 humidity 80.0 10 < th dose independent rect. 7 1
75 57.50 temperature 25.0 90 > th dose independent rect. 8 2
77 57.55 humidity 80.0 14400 < th dose dependent rect. 2 7
81 57.61 temperature 25.0 10 > th dose independent rect. 9 2
83 57.63 humidity 80.0 10 < th dose independent rect. 23 9
103 57.83 radiation 1.0 43200 < th dose dependent rect. 3 1
111 57.95 humidity 90.0 90 < th dose independent rect. 1 9
112 57.97 temperature 25.0 90 > th dose independent rect. 1 1
132 58.10 temperature 25.0 90 > th dose dependent rect. 1 2
135 58.15 humidity 80.0 14400 < th dose dependent rect. 7 1
141 58.25 atmosphere 995.0 10 > th dose independent rect. 10 23
149 58.29 radiation 1.0 4320 < th dose dependent rect. 3 1
152 58.30 atmosphere 1010.0 30 < th dose dependent rect. 2 1
153 58.32 humidity 90.0 30 < th dose independent rect. 9 1
156 58.33 humidity 90.0 90 < th dose independent rect. 1 7
163 58.35 radiation 10.0 10 > th dose independent rect. 16 16
171 58.37 wind 3.0 30 < th dose independent rect. 2 1
172 58.37 wind 9.0 1440 < th dose independent rect. 3 1
173 58.37 temperature 10.0 1440 > th dose independent rect. 3 1
176 58.37 temperature 30.0 1440 < th dose independent rect. 3 1
180 58.37 humidity 50.0 1440 > th dose independent rect. 3 1
189 58.37 atmosphere 1005.0 90 > th dose independent rect. 2 1
190 58.37 atmosphere 995.0 1440 > th dose independent rect. 3 1
191 58.37 radiation 1.0 1440 < th dose independent rect. 3 1
211 58.37 temperature 10.0 1440 > th dose independent rect. 4 23
230 58.38 wind 7.0 30 < th dose dependent rect. 2 1
243 58.40 temperature 10.0 30 > th dose independent rect. 2 1
245 58.40 temperature 30.0 30 < th dose independent rect. 2 1
246 58.40 humidity 50.0 30 > th dose independent rect. 2 1
249 58.40 humidity 90.0 30 > th dose independent rect. 2 1
250 58.40 atmosphere 995.0 30 > th dose independent rect. 2 1
252 58.40 atmosphere 1010.0 30 < th dose independent rect. 2 1
254 58.40 radiation 1.0 30 < th dose independent rect. 2 1
259 58.40 precipitation 0.1 30 < th dose independent rect. 2 1
260 58.40 temperature 10.0 30 > th dose independent rect. 3 23
262 58.40 humidity 50.0 30 > th dose dependent rect. 2 1
267 58.40 radiation 1.0 30 < th dose dependent rect. 2 1
272 58.40 precipitation 0.1 30 < th dose dependent rect. 2 1
273 58.41 wind 1.0 30 > th dose independent rect. 2 1
277 58.41 humidity 50.0 10 > th dose dependent rect. 9 1
286 58.43 temperature 30.0 30 < th dose dependent rect. 2 1
287 58.44 atmosphere 1000.0 30 > th dose independent rect. 11 21
353 58.52 precipitation 0.1 30 < th dose independent rect. 3 23
356 58.52 precipitation 0.1 30 < th dose dependent rect. 3 23
405 58.68 humidity 90.0 90 < th dose independent rect. 2 1
413 58.70 humidity 70.0 14400 > th dose independent rect. 8 1
468 58.84 wind 9.0 30 < th dose independent rect. 3 23
475 58.87 temperature 30.0 30 < th dose independent rect. 9 1
477 58.88 humidity 80.0 14400 < th dose independent rect. 7 1
488 58.91 humidity 60.0 30 > th dose independent rect. 9 1
489 58.91 humidity 70.0 14400 > th dose independent rect. 20 13
491 58.92 humidity 70.0 14400 > th dose independent rect. 4 5
492 58.92 humidity 70.0 14400 > th dose independent rect. 24 9
493 58.92 humidity 70.0 14400 > th dose independent rect. 22 11
495 58.92 humidity 90.0 90 < th dose independent rect. 1 20
508 58.95 atmosphere 995.0 720 > th dose independent rect. 23 16
512 58.96 temperature 25.0 270 < th dose independent rect. 6 1
514 58.96 humidity 50.0 30 > th dose independent rect. 3 23
516 58.96 humidity 70.0 4320 > th dose dependent rect. 3 6
541 58.98 humidity 80.0 720 > th dose dependent rect. 3 1
548 59.00 temperature 10.0 1440 > th dose independent rect. 10 1
551 59.00 atmosphere 995.0 1440 > th dose independent rect. 10 1
557 59.00 temperature 10.0 1440 > th dose independent rect. 11 23
560 59.00 wind 1.0 270 < th dose dependent rect. 13 1
562 59.01 wind 7.0 30 < th dose independent rect. 9 1
564 59.01 temperature 10.0 30 > th dose independent rect. 9 1
567 59.01 atmosphere 995.0 30 > th dose independent rect. 9 1
568 59.01 atmosphere 1015.0 30 < th dose independent rect. 9 1
570 59.01 precipitation 0.1 30 < th dose independent rect. 9 1
571 59.01 temperature 10.0 30 > th dose independent rect. 10 23
572 59.01 precipitation 0.1 30 < th dose dependent rect. 9 1
574 59.01 temperature 15.0 30 > th dose dependent rect. 8 3
580 59.02 wind 9.0 30 < th dose independent rect. 10 23
629 59.06 humidity 90.0 90 < th dose dependent rect. 1 7
641 59.07 humidity 90.0 90 < th dose dependent rect. 2 5
665 59.09 humidity 80.0 14400 < th dose independent rect. 22 16
666 59.09 temperature 30.0 30 < th dose independent rect. 3 23
678 59.10 humidity 80.0 10 > th dose dependent rect. 10 1
690 59.11 atmosphere 995.0 10 > th dose independent rect. 10 10
695 59.12 humidity 90.0 720 > th dose independent rect. 3 1
720 59.15 radiation 40.0 90 < th dose independent rect. 10 22
727 59.16 wind 5.0 14400 < th dose independent rect. 10 5
737 59.17 humidity 80.0 14400 > th dose independent rect. 22 16
742 59.18 wind 5.0 14400 < th dose independent rect. 11 1
759 59.19 wind 7.0 14400 < th dose dependent rect. 11 1
762 59.19 humidity 60.0 4320 > th dose dependent rect. 23 13
781 59.21 wind 5.0 14400 > th dose independent rect. 10 5
793 59.22 temperature 25.0 90 > th dose independent rect. 1 9
807 59.23 atmosphere 1000.0 10 > th dose independent rect. 8 23
808 59.23 humidity 80.0 4320 > th dose dependent rect. 7 1
815 59.24 wind 3.0 14400 > th dose independent rect. 19 1
857 59.26 radiation 40.0 90 < th dose independent rect. 8 1
862 59.26 humidity 90.0 4320 < th dose independent rect. 4 5
893 59.27 humidity 50.0 4320 > th dose dependent sin 6 NA
894 59.27 humidity 50.0 4320 > th dose dependent rect. 6 2
912 59.28 wind 5.0 14400 < th dose independent rect. 9 8
929 59.28 wind 9.0 30 < th dose dependent rect. 11 21
940 59.29 wind 1.0 14400 > th dose dependent rect. 11 1
996 59.30 humidity 80.0 4320 < th dose independent rect. 7 6
998 59.30 wind 5.0 14400 > th dose independent rect. 9 8
999 59.30 humidity 90.0 4320 > th dose independent rect. 3 11
1000 59.30 radiation 10.0 10 < th dose independent rect. 9 17