BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0586000 Os05g0586000|Os05g0586000
         (155 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os05g0586000                                                      270   3e-73
Os08g0337800                                                       80   6e-16

>Os05g0586000 
          Length = 155

 Score =  270 bits (690), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 134/155 (86%), Positives = 134/155 (86%)

Query: 1   MTRDPPLITGDALALHPIDVCHRSLLHGTXXXXXXSTGRKRQREDEFVPSVTELEQAGVH 60
           MTRDPPLITGDALALHPIDVCHRSLLHGT      STGRKRQREDEFVPSVTELEQAGVH
Sbjct: 1   MTRDPPLITGDALALHPIDVCHRSLLHGTPPPPPPSTGRKRQREDEFVPSVTELEQAGVH 60

Query: 61  FSRSPTRSLRDISFRPGDDXXXXXXXXXXXXXXXDKAVARMFNRLAKNAVLDRRSPLRGV 120
           FSRSPTRSLRDISFRPGDD               DKAVARMFNRLAKNAVLDRRSPLRGV
Sbjct: 61  FSRSPTRSLRDISFRPGDDVRLLSGGVVSNGLGSDKAVARMFNRLAKNAVLDRRSPLRGV 120

Query: 121 QGQYLNLRTNSHHPCTPSASYIYANPEIARGAEIY 155
           QGQYLNLRTNSHHPCTPSASYIYANPEIARGAEIY
Sbjct: 121 QGQYLNLRTNSHHPCTPSASYIYANPEIARGAEIY 155



>Os08g0337800 
          Length = 468

 Score = 80.1 bits (196), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 47/78 (60%), Positives = 53/78 (67%), Gaps = 6/78 (7%)

Query: 1   MTRDPPLI-TGDALALHPIDVCHRSLLHGTXXXXXXSTGRKRQREDEFVPSVTELEQAGV 59
           M  DPP +  G  LALHP+DVCHRSLLHG+       TGR+    +EFVPS TEL+QAGV
Sbjct: 235 MIPDPPAMRGGGGLALHPLDVCHRSLLHGSPPRPC-HTGRR----EEFVPSATELDQAGV 289

Query: 60  HFSRSPTRSLRDISFRPG 77
            F  S TRSL DISFR G
Sbjct: 290 RFRPSRTRSLHDISFRHG 307



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.320    0.135    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,815,128
Number of extensions: 158902
Number of successful extensions: 214
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 214
Number of HSP's successfully gapped: 2
Length of query: 155
Length of database: 17,035,801
Length adjustment: 92
Effective length of query: 63
Effective length of database: 12,232,113
Effective search space: 770623119
Effective search space used: 770623119
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 151 (62.8 bits)