Os05g0586000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os05g0586000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 490.92 | 1.04 | 9.72 | -0.486 | 5.42 | 2.75 | -1.65 | -1.99 | 0.0938 | 3.58 | 3.93 | 106 | 16.7 | -- |
| 496.32 | 1.04 | 9.73 | -0.501 | 5.4 | 2.74 | -1.43 | -- | 0.0818 | 3.56 | 3.797 | 101 | 16.8 | -- |
| 499.01 | 1.04 | 9.72 | -0.482 | 5.41 | 2.68 | -- | -1.65 | 0.102 | 3.56 | 4.238 | 105 | 16.7 | -- |
| 502.84 | 1.04 | 9.72 | -0.497 | 5.4 | 2.68 | -- | -- | 0.0908 | 3.56 | 4.07 | 101 | 16.7 | -- |
| 1257.2 | 1.65 | 9.84 | -1.68 | -- | 4.94 | -- | -10 | -0.247 | -- | 2.442 | 167 | 23.6 | -- |
| 609.04 | 1.16 | 9.77 | -0.614 | 5.27 | -- | -1.11 | -- | 0.0202 | 2.94 | -- | -- | -- | -- |
| 613.17 | 1.16 | 9.76 | -0.589 | 5.26 | -- | -- | -- | 0.0268 | 2.94 | -- | -- | -- | -- |
| 608.01 | 1.15 | 9.77 | -0.576 | -- | 5.21 | -- | -- | 0.0132 | -- | 110.9 | 2 | 2.81 | -- |
| 509.36 | 1.05 | 9.71 | -- | 5.38 | 2.75 | -- | -- | 0.141 | 3.57 | 3.93 | 105 | 16.7 | -- |
| 2207.85 | 2.2 | 9.74 | -0.364 | -- | -- | -- | -- | 0.163 | -- | -- | -- | -- | -- |
| 622.31 | 1.17 | 9.75 | -- | 5.25 | -- | -- | -- | 0.0924 | 2.94 | -- | -- | -- | -- |
| 617.15 | 1.16 | 9.76 | -- | -- | 5.21 | -- | -- | 0.0767 | -- | 141 | 3 | 2.87 | -- |
| 2211.35 | 2.19 | 9.73 | -- | -- | -- | -- | -- | 0.203 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 505.32 | radiation | 1 | 90 | < th | dose independent | sin | 23 | NA |
| 3 | 506.03 | humidity | 80 | 270 | < th | dose independent | rect. | 6 | 9 |
| 4 | 506.36 | radiation | 1 | 90 | > th | dose independent | sin | 23 | NA |
| 5 | 506.48 | radiation | 1 | 90 | < th | dose dependent | sin | 23 | NA |
| 12 | 510.03 | humidity | 90 | 10 | < th | dose dependent | rect. | 7 | 10 |
| 18 | 511.12 | humidity | 90 | 270 | < th | dose dependent | rect. | 6 | 9 |
| 22 | 511.89 | humidity | 80 | 270 | < th | dose independent | rect. | 9 | 6 |
| 27 | 512.44 | humidity | 90 | 30 | < th | dose dependent | rect. | 24 | 17 |
| 29 | 512.80 | humidity | 70 | 10 | > th | dose dependent | sin | 23 | NA |
| 31 | 512.91 | humidity | 90 | 270 | < th | dose dependent | rect. | 20 | 19 |
| 38 | 513.41 | humidity | 90 | 30 | < th | dose dependent | rect. | 22 | 19 |
| 40 | 513.74 | humidity | 70 | 10 | > th | dose dependent | rect. | 8 | 12 |
| 52 | 514.37 | humidity | 90 | 90 | < th | dose dependent | rect. | 11 | 6 |
| 56 | 514.78 | radiation | 1 | 90 | < th | dose independent | rect. | 5 | 15 |
| 57 | 514.80 | radiation | 1 | 90 | < th | dose dependent | rect. | 5 | 15 |
| 66 | 515.28 | humidity | 70 | 10 | > th | dose dependent | rect. | 6 | 14 |
| 82 | 515.85 | humidity | 90 | 10 | < th | dose dependent | sin | 23 | NA |
| 83 | 516.02 | humidity | 60 | 270 | > th | dose independent | rect. | 1 | 10 |
| 95 | 516.57 | radiation | 1 | 270 | < th | dose independent | rect. | 7 | 12 |
| 100 | 516.75 | humidity | 60 | 10 | > th | dose dependent | rect. | 8 | 14 |
| 105 | 516.99 | humidity | 90 | 10 | < th | dose dependent | rect. | 9 | 8 |
| 114 | 517.19 | humidity | 80 | 90 | < th | dose independent | rect. | 11 | 6 |
| 135 | 517.88 | humidity | 60 | 10 | > th | dose dependent | rect. | 6 | 16 |
| 165 | 518.76 | humidity | 60 | 10 | > th | dose dependent | rect. | 10 | 12 |
| 182 | 519.28 | humidity | 60 | 10 | > th | dose dependent | rect. | 10 | 10 |
| 203 | 519.91 | humidity | 70 | 10 | > th | dose independent | rect. | 3 | 19 |
| 278 | 522.19 | humidity | 50 | 10 | > th | dose dependent | rect. | 4 | 18 |
| 351 | 524.25 | radiation | 10 | 10 | < th | dose dependent | rect. | 6 | 16 |
| 365 | 524.48 | humidity | 50 | 90 | > th | dose dependent | rect. | 3 | 17 |
| 370 | 524.56 | humidity | 80 | 270 | < th | dose independent | rect. | 11 | 3 |
| 377 | 524.81 | wind | 1 | 270 | > th | dose independent | rect. | 3 | 17 |
| 422 | 525.84 | humidity | 90 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 442 | 526.19 | humidity | 50 | 10 | > th | dose dependent | rect. | 4 | 16 |
| 448 | 526.40 | humidity | 70 | 10 | > th | dose independent | rect. | 10 | 12 |
| 489 | 527.41 | radiation | 30 | 30 | < th | dose dependent | rect. | 10 | 12 |
| 504 | 527.78 | temperature | 15 | 270 | > th | dose independent | rect. | 20 | 19 |
| 506 | 527.81 | humidity | 80 | 270 | > th | dose independent | rect. | 2 | 17 |
| 522 | 528.11 | humidity | 80 | 10 | < th | dose independent | rect. | 7 | 11 |
| 523 | 528.19 | radiation | 1 | 270 | > th | dose independent | rect. | 4 | 12 |
| 543 | 528.32 | humidity | 90 | 270 | < th | dose dependent | rect. | 11 | 2 |
| 557 | 528.50 | humidity | 80 | 270 | < th | dose independent | sin | 2 | NA |
| 566 | 528.66 | radiation | 10 | 90 | < th | dose dependent | rect. | 1 | 23 |
| 614 | 529.28 | humidity | 50 | 10 | > th | dose dependent | rect. | 17 | 19 |
| 667 | 530.20 | radiation | 30 | 30 | < th | dose dependent | rect. | 8 | 14 |
| 694 | 530.63 | humidity | 70 | 10 | > th | dose independent | rect. | 8 | 14 |
| 720 | 530.91 | humidity | 70 | 10 | > th | dose independent | rect. | 6 | 16 |
| 808 | 531.56 | humidity | 80 | 10 | > th | dose independent | sin | 23 | NA |
| 865 | 532.12 | humidity | 70 | 10 | > th | dose independent | rect. | 1 | 23 |
| 887 | 532.35 | humidity | 70 | 30 | < th | dose independent | rect. | 11 | 23 |