BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0582000 Os05g0582000|Os05g0582000
         (297 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os05g0582000  Conserved hypothetical protein                      378   e-105

>Os05g0582000 Conserved hypothetical protein
          Length = 297

 Score =  378 bits (971), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 196/246 (79%), Positives = 196/246 (79%)

Query: 52  HEASKGFHVDIVNAAPRDTVAGRRFDLFFVSNGKAERILHYANRGVEAALFPDASFPRKQ 111
           HEASKGFHVDIVNAAPRDTVAGRRFDLFFVSNGKAERILHYANRGVEAALFPDASFPRKQ
Sbjct: 52  HEASKGFHVDIVNAAPRDTVAGRRFDLFFVSNGKAERILHYANRGVEAALFPDASFPRKQ 111

Query: 112 VTRVTVRMAGHNLTDDDDATVIAAGVAPGEYVISLSPRLMHPASDKXXXXXXXXXXXXXX 171
           VTRVTVRMAGHNLTDDDDATVIAAGVAPGEYVISLSPRLMHPASDK              
Sbjct: 112 VTRVTVRMAGHNLTDDDDATVIAAGVAPGEYVISLSPRLMHPASDKAADAVANAVRRAVA 171

Query: 172 XMWLWDGRGAAPARVTEAMVDYLSSGADAVEASPANXXXXXXAPHCMSARFLGHLERRRG 231
            MWLWDGRGAAPARVTEAMVDYLSSGADAVEASPAN      APHCMSARFLGHLERRRG
Sbjct: 172 RMWLWDGRGAAPARVTEAMVDYLSSGADAVEASPANDDDDDDAPHCMSARFLGHLERRRG 231

Query: 232 GFVARLNRAMRDRWSDAAMDAALGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSTSAGD 291
           GFVARLNRAMRDRWSDAAMDAALG                             GSTSAGD
Sbjct: 232 GFVARLNRAMRDRWSDAAMDAALGVPARPVCAAYRAAAAAAALTQQQPPAALAGSTSAGD 291

Query: 292 GSRVAM 297
           GSRVAM
Sbjct: 292 GSRVAM 297



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.320    0.132    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,824,029
Number of extensions: 232327
Number of successful extensions: 448
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 447
Number of HSP's successfully gapped: 1
Length of query: 297
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 197
Effective length of database: 11,814,401
Effective search space: 2327436997
Effective search space used: 2327436997
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 156 (64.7 bits)