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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0582000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.81 (0.0655) R2 : 0.923
β1 : 0.383 (0.239) R2dD : 0.000471 R2D : -0.00964
β2 : 11.8 (0.16) R2dC : 0.935 R2C : 0.901
β3 : -30.6 (2.85) R2dE : 0.285 R2E : -0.298
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 95.5 (9.93) R2dD*E : 0.228 R2D*E : -0.212
γ1 : -0.335 (0.137) R2dN8 : 0.00136 R2N8 : -0.0129
σ : 1.2
deviance : 660.97
__
_____
C
peak time of C : 9.02
E
wheather : precipitation
threshold : 0.1012
memory length : 278
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 1.98
open length of G : 2.02

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
660.8 1.21 7.81 0.376 11.8 -30.6 0.222 95.4 -0.334 9.02 0.1026 279 1.98 2.01
829.35 1.35 7.93 -0.101 11.6 -2.26 0.51 -- -0.198 9.1 0.1026 279 1.98 2.01
660.97 1.2 7.81 0.383 11.8 -30.6 -- 95.5 -0.335 9.02 0.1012 278 1.98 2.02
741 1.27 7.92 -0.00287 11.6 -2.73 -- -- -0.195 9.09 0.4583 361 1.49 1.72
8509.19 4.3 8.19 0.0783 -- -30.4 -- 102 -0.163 -- 0.294 63 2.55 2.55
834.39 1.35 7.93 -0.122 11.6 -- 0.49 -- -0.194 9.11 -- -- -- --
835.23 1.35 7.93 -0.104 11.6 -- -- -- -0.193 9.11 -- -- -- --
8516.9 4.3 8.21 -0.0645 -- -2.26 -- -- -0.0751 -- 0.3648 114 1.15 2.12
724.31 1.25 7.91 -- 11.8 -4.52 -- -- -0.26 9.1 0.3824 337 1.49 1.77
8552.05 4.32 8.24 -0.133 -- -- -- -- -0.129 -- -- -- -- --
835.52 1.35 7.93 -- 11.6 -- -- -- -0.182 9.11 -- -- -- --
8511.73 4.3 8.26 -- -- -3.26 -- -- -0.0404 -- 0.4665 123 1.15 2.12
8552.51 4.32 8.24 -- -- -- -- -- -0.115 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 662.89 precipitation 0.1 270 > th dose independent rect. 2 2
2 664.01 precipitation 0.1 270 > th dose dependent rect. 2 2
3 673.23 precipitation 0.1 270 > th dose independent rect. 23 5
6 677.46 precipitation 0.1 270 > th dose dependent rect. 24 4
9 683.68 temperature 20.0 10 > th dose independent rect. 24 4
11 686.41 precipitation 0.1 270 < th dose independent rect. 2 11
12 686.41 precipitation 0.1 270 < th dose dependent rect. 2 11
15 689.92 temperature 20.0 270 > th dose independent rect. 23 3
22 695.89 temperature 20.0 10 > th dose independent rect. 24 6
27 699.94 precipitation 0.1 720 < th dose independent rect. 19 10
28 699.94 precipitation 0.1 720 < th dose dependent rect. 19 10
29 700.23 humidity 50.0 720 > th dose dependent rect. 20 6
34 703.59 temperature 10.0 270 > th dose independent rect. 2 11
35 703.59 atmosphere 995.0 270 > th dose independent rect. 2 11
36 703.59 atmosphere 1015.0 270 < th dose independent rect. 2 11
37 703.59 temperature 10.0 270 > th dose independent rect. 13 13
38 703.88 precipitation 0.1 720 < th dose independent rect. 1 14
39 703.88 precipitation 0.1 720 < th dose dependent rect. 1 14
40 705.10 radiation 1.0 30 > th dose independent rect. 5 11
53 705.61 humidity 50.0 270 > th dose independent rect. 2 11
59 706.52 wind 9.0 270 < th dose independent rect. 2 11
60 706.87 wind 7.0 720 < th dose independent rect. 19 10
61 707.21 wind 9.0 270 < th dose independent rect. 13 13
64 707.39 radiation 1.0 90 < th dose independent rect. 23 19
65 708.52 precipitation 0.1 270 < th dose independent rect. 13 13
66 708.52 precipitation 0.1 270 < th dose dependent rect. 13 13
71 709.64 wind 9.0 720 < th dose independent rect. 17 14
72 710.20 radiation 1.0 90 < th dose dependent rect. 23 19
73 710.82 precipitation 0.1 720 < th dose independent rect. 17 14
74 710.82 precipitation 0.1 720 < th dose dependent rect. 17 14
75 711.27 wind 7.0 720 < th dose independent rect. 17 5
92 713.84 precipitation 0.1 720 < th dose independent rect. 19 18
93 713.84 precipitation 0.1 720 < th dose dependent rect. 19 18
95 714.17 temperature 15.0 10 > th dose dependent rect. 24 4
96 714.40 humidity 90.0 720 < th dose dependent rect. 19 2
97 714.41 temperature 15.0 270 > th dose dependent rect. 23 3
102 714.83 precipitation 0.1 720 < th dose independent rect. 2 19
103 714.83 precipitation 0.1 720 < th dose dependent rect. 2 19
108 715.82 temperature 10.0 10 > th dose dependent rect. 4 20
127 716.63 atmosphere 995.0 270 > th dose independent rect. 13 13
138 717.93 precipitation 0.1 720 < th dose independent rect. 17 22
139 717.93 precipitation 0.1 720 < th dose dependent rect. 17 22
140 718.30 precipitation 0.1 720 < th dose independent rect. 10 19
141 718.30 precipitation 0.1 720 < th dose dependent rect. 10 19
143 718.74 radiation 10.0 720 < th dose independent rect. 19 10
146 718.97 radiation 20.0 720 < th dose independent rect. 17 14
150 719.08 radiation 10.0 720 < th dose dependent rect. 19 10
151 719.15 humidity 50.0 270 > th dose independent rect. 13 13
164 720.28 temperature 10.0 10 > th dose dependent rect. 4 12
165 720.36 wind 1.0 10 < th dose independent rect. 23 5
167 720.57 temperature 10.0 720 > th dose independent rect. 19 10
168 720.57 temperature 30.0 720 < th dose independent rect. 19 10
169 720.57 humidity 50.0 720 > th dose independent rect. 19 10
170 720.57 atmosphere 995.0 720 > th dose independent rect. 19 10
174 720.57 temperature 10.0 720 > th dose independent rect. 5 14
175 720.57 atmosphere 1015.0 720 < th dose independent rect. 5 14
186 721.29 radiation 40.0 720 < th dose independent rect. 14 11
200 721.48 precipitation 0.1 270 < th dose independent sin 6 NA
201 721.48 precipitation 0.1 270 < th dose dependent sin 6 NA
208 721.91 radiation 1.0 720 > th dose independent rect. 9 5
209 721.93 temperature 10.0 720 > th dose independent rect. 7 10
210 721.93 atmosphere 1015.0 720 < th dose independent rect. 7 10
211 721.93 temperature 10.0 720 > th dose independent rect. 17 14
212 721.93 radiation 40.0 720 < th dose independent rect. 17 14
217 722.18 humidity 50.0 720 > th dose dependent rect. 16 10
222 722.49 atmosphere 1005.0 90 < th dose dependent rect. 1 6
226 722.75 wind 7.0 90 < th dose independent rect. 18 13
236 723.38 precipitation 0.1 720 < th dose independent rect. 17 5
237 723.38 precipitation 0.1 720 < th dose dependent rect. 17 5
238 723.40 atmosphere 1005.0 10 < th dose dependent rect. 24 7
240 723.57 wind 1.0 10 < th dose independent rect. 11 17
253 724.41 wind 9.0 90 < th dose independent rect. 7 11
254 724.42 precipitation 0.1 720 < th dose independent rect. 9 6
255 724.42 precipitation 0.1 720 < th dose dependent rect. 9 6
265 725.21 atmosphere 995.0 90 > th dose independent rect. 18 13
268 725.28 temperature 10.0 90 > th dose independent rect. 7 11
269 725.28 atmosphere 1015.0 90 < th dose independent rect. 7 11
270 725.28 temperature 10.0 90 > th dose independent rect. 18 13
271 725.28 humidity 50.0 90 > th dose independent rect. 18 13
272 725.28 radiation 40.0 90 < th dose independent rect. 18 13
286 725.79 precipitation 0.1 720 < th dose independent rect. 3 2
287 725.79 precipitation 0.1 720 < th dose dependent rect. 3 2
289 725.88 precipitation 0.1 720 < th dose independent rect. 1 6
290 725.88 precipitation 0.1 720 < th dose dependent rect. 1 6
313 726.61 temperature 10.0 720 > th dose independent rect. 15 10
314 726.61 temperature 10.0 720 > th dose independent rect. 1 14
327 726.96 precipitation 0.1 720 < th dose independent rect. 19 1
334 726.96 precipitation 0.1 720 < th dose dependent rect. 19 1
343 727.25 humidity 70.0 10 > th dose dependent rect. 23 19
365 727.80 humidity 60.0 14400 > th dose independent rect. 20 12
366 727.84 wind 3.0 10 < th dose dependent rect. 24 4
369 727.86 humidity 60.0 720 > th dose independent rect. 16 1
392 728.70 wind 1.0 720 > th dose independent rect. 17 4
406 729.00 wind 7.0 720 < th dose independent rect. 5 5
408 729.02 temperature 30.0 720 < th dose independent rect. 5 4
426 729.40 humidity 50.0 10 > th dose dependent rect. 14 14
435 729.52 radiation 40.0 270 < th dose dependent rect. 17 13
437 729.62 wind 9.0 720 < th dose independent rect. 10 19
438 729.65 precipitation 0.1 90 < th dose independent sin 4 NA
440 729.65 precipitation 0.1 90 < th dose dependent sin 4 NA
457 730.22 radiation 40.0 720 < th dose independent rect. 15 17
465 730.40 temperature 10.0 720 > th dose independent rect. 9 6
466 730.40 atmosphere 1015.0 720 < th dose independent rect. 9 6
467 730.40 temperature 10.0 720 > th dose independent rect. 15 18
474 730.57 radiation 10.0 720 < th dose independent rect. 2 4
480 730.70 temperature 30.0 90 < th dose independent rect. 18 13
486 730.90 atmosphere 995.0 720 > th dose independent rect. 9 5
492 730.95 temperature 10.0 720 > th dose independent rect. 17 5
493 730.95 radiation 30.0 720 < th dose independent rect. 17 5
495 730.95 temperature 10.0 720 > th dose independent rect. 22 19
504 731.28 temperature 10.0 720 > th dose independent rect. 21 6
505 731.28 temperature 30.0 720 < th dose independent rect. 21 6
506 731.28 humidity 50.0 720 > th dose independent rect. 21 6
509 731.28 atmosphere 995.0 720 > th dose independent rect. 21 6
510 731.28 radiation 1.0 720 < th dose independent rect. 21 6
515 731.28 temperature 10.0 720 > th dose independent rect. 3 18
516 731.28 radiation 1.0 720 < th dose dependent rect. 21 6
523 731.34 humidity 50.0 720 > th dose independent rect. 5 5
525 731.37 temperature 10.0 720 > th dose independent rect. 5 5
526 731.37 atmosphere 995.0 720 > th dose independent rect. 5 5
527 731.37 atmosphere 1015.0 720 < th dose independent rect. 5 5
529 731.37 temperature 10.0 720 > th dose independent rect. 10 19
538 731.56 wind 7.0 720 < th dose independent rect. 19 1
539 731.56 radiation 40.0 720 < th dose independent rect. 14 19
540 731.57 wind 1.0 90 > th dose independent rect. 7 11
541 731.59 radiation 40.0 720 < th dose independent rect. 15 2
574 732.14 radiation 40.0 10 < th dose dependent rect. 14 14
576 732.20 humidity 90.0 720 < th dose independent rect. 19 2
583 732.47 humidity 80.0 10 > th dose independent rect. 24 4
587 732.53 temperature 10.0 10 > th dose dependent rect. 4 10
589 732.57 wind 7.0 720 < th dose independent rect. 3 2
598 732.61 radiation 40.0 720 < th dose independent rect. 5 4
615 732.86 wind 1.0 10 < th dose independent rect. 8 20
621 732.97 wind 7.0 720 < th dose independent rect. 1 5
627 733.22 precipitation 0.1 90 < th dose independent rect. 7 11
629 733.22 precipitation 0.1 90 < th dose dependent rect. 7 11
632 733.25 radiation 10.0 720 < th dose independent rect. 3 2
650 733.64 radiation 10.0 720 < th dose dependent rect. 3 2
656 733.75 atmosphere 995.0 720 > th dose independent rect. 1 13
665 734.04 radiation 10.0 10 < th dose independent rect. 15 13
667 734.13 precipitation 0.1 720 < th dose independent rect. 5 5
668 734.13 precipitation 0.1 720 < th dose dependent rect. 5 5
675 734.33 wind 1.0 720 > th dose independent rect. 15 2
685 734.58 humidity 60.0 720 > th dose independent rect. 15 18
689 734.66 humidity 70.0 10 > th dose dependent rect. 24 4
690 734.68 humidity 60.0 14400 > th dose independent rect. 4 4
691 734.73 temperature 10.0 720 > th dose independent rect. 15 2
692 734.73 atmosphere 1015.0 720 < th dose independent rect. 15 2
693 734.73 temperature 10.0 720 > th dose independent rect. 17 22
746 735.35 humidity 60.0 270 > th dose independent rect. 21 12
753 735.50 atmosphere 1005.0 270 < th dose dependent rect. 1 2
765 735.58 temperature 10.0 270 > th dose independent rect. 9 12
766 735.58 temperature 10.0 270 > th dose independent rect. 21 12
768 735.58 atmosphere 995.0 270 > th dose independent rect. 21 12
775 735.83 radiation 1.0 1440 < th dose independent rect. 11 1
776 735.83 radiation 1.0 1440 < th dose dependent rect. 11 1
780 735.94 temperature 10.0 720 > th dose independent rect. 3 2
781 735.94 temperature 30.0 720 < th dose independent rect. 3 2
782 735.94 humidity 50.0 720 > th dose independent rect. 3 2
785 735.94 atmosphere 995.0 720 > th dose independent rect. 3 2
789 735.94 temperature 10.0 720 > th dose independent rect. 5 22
794 735.99 wind 9.0 720 < th dose independent rect. 21 5
798 736.10 precipitation 0.1 720 < th dose independent rect. 21 5
799 736.10 precipitation 0.1 720 < th dose dependent rect. 21 5
803 736.21 radiation 40.0 90 < th dose independent rect. 14 13
816 736.46 humidity 90.0 720 > th dose dependent rect. 20 4
834 736.61 wind 9.0 270 < th dose independent rect. 21 12
839 736.65 precipitation 0.1 270 < th dose independent rect. 9 12
842 736.65 precipitation 0.1 270 < th dose dependent rect. 9 12
854 736.80 temperature 10.0 1440 > th dose independent rect. 19 13
857 736.80 temperature 30.0 1440 < th dose independent rect. 19 13
861 736.80 humidity 50.0 1440 > th dose independent rect. 19 13
863 736.80 atmosphere 995.0 1440 > th dose independent rect. 19 13
864 736.82 humidity 90.0 720 > th dose dependent rect. 22 1
875 736.99 temperature 30.0 270 < th dose independent rect. 21 12
880 737.05 wind 9.0 720 < th dose independent rect. 9 5
889 737.19 wind 9.0 720 < th dose independent rect. 1 14
909 737.30 atmosphere 995.0 90 > th dose independent rect. 7 11
910 737.31 atmosphere 1000.0 270 > th dose independent rect. 23 2
911 737.31 precipitation 0.1 720 < th dose independent rect. 15 2
912 737.31 precipitation 0.1 720 < th dose dependent rect. 15 2
945 737.82 atmosphere 1015.0 720 < th dose independent rect. 17 4
961 737.96 humidity 60.0 720 > th dose independent rect. 15 10
966 737.99 atmosphere 1015.0 720 < th dose independent rect. 3 17
979 738.19 radiation 1.0 30 < th dose independent sin 5 NA