BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0578000 Os05g0578000|AK065040
         (271 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os05g0578000  Similar to PEX14 protein                            440   e-124

>Os05g0578000 Similar to PEX14 protein
          Length = 271

 Score =  440 bits (1132), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 225/271 (83%), Positives = 225/271 (83%)

Query: 1   MVLGSPEVGMEDSSATHLSDEVQDPGRGSSDASVRTSLRDSTGKXXXXXXXXXXXXXXQS 60
           MVLGSPEVGMEDSSATHLSDEVQDPGRGSSDASVRTSLRDSTGK              QS
Sbjct: 1   MVLGSPEVGMEDSSATHLSDEVQDPGRGSSDASVRTSLRDSTGKEAVAAVEPVREELVQS 60

Query: 61  AVGFLKHPKVVASSDVQRRSFLEKKGLTVDEIDEAFXXXXXXXXXXXXXXYCTYQGVSDH 120
           AVGFLKHPKVVASSDVQRRSFLEKKGLTVDEIDEAF              YCTYQGVSDH
Sbjct: 61  AVGFLKHPKVVASSDVQRRSFLEKKGLTVDEIDEAFRRLLSPSSNSMSPNYCTYQGVSDH 120

Query: 121 SSKITQENPSTVTKCMDDDSGRPEPETESVDPVVPRHPKSYMEIMEMIQRGERXXXXXXX 180
           SSKITQENPSTVTKCMDDDSGRPEPETESVDPVVPRHPKSYMEIMEMIQRGER       
Sbjct: 121 SSKITQENPSTVTKCMDDDSGRPEPETESVDPVVPRHPKSYMEIMEMIQRGERPDDIQDI 180

Query: 181 XXXXXXXXXXXSESRMAPKPKPWEKQGQESSIWELKSQSMDTIESRSEIQLDSANQFTET 240
                      SESRMAPKPKPWEKQGQESSIWELKSQSMDTIESRSEIQLDSANQFTET
Sbjct: 181 NDDPPNPYQPISESRMAPKPKPWEKQGQESSIWELKSQSMDTIESRSEIQLDSANQFTET 240

Query: 241 ENRSNQGDSLLLEETVAGSEAHTDDAASTKS 271
           ENRSNQGDSLLLEETVAGSEAHTDDAASTKS
Sbjct: 241 ENRSNQGDSLLLEETVAGSEAHTDDAASTKS 271



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.305    0.122    0.333 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,560,205
Number of extensions: 238016
Number of successful extensions: 472
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 471
Number of HSP's successfully gapped: 1
Length of query: 271
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 172
Effective length of database: 11,866,615
Effective search space: 2041057780
Effective search space used: 2041057780
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 155 (64.3 bits)