BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0569000 Os05g0569000|Os05g0569000
         (348 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os05g0569000                                                      692   0.0  

>Os05g0569000 
          Length = 348

 Score =  692 bits (1787), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/348 (95%), Positives = 332/348 (95%)

Query: 1   MPSGNAGIELRNSTWLHGYSVYAPFCREGHITLRFRLIGNGTRQQRCSDQISGVGSRSFW 60
           MPSGNAGIELRNSTWLHGYSVYAPFCREGHITLRFRLIGNGTRQQRCSDQISGVGSRSFW
Sbjct: 1   MPSGNAGIELRNSTWLHGYSVYAPFCREGHITLRFRLIGNGTRQQRCSDQISGVGSRSFW 60

Query: 61  KASKRARLHXXXXXXXXXXXXXXXXCWSAAAPSTDDAEKRPRWRWQLHLELVAGPLDLGT 120
           KASKRARLH                CWSAAAPSTDDAEKRPRWRWQLHLELVAGPLDLGT
Sbjct: 61  KASKRARLHGGDGGSGGGVVVRGAGCWSAAAPSTDDAEKRPRWRWQLHLELVAGPLDLGT 120

Query: 121 IFDVDMEDFVHGRRTLFAVCAYALLKAIPGLRALVDDIPHHSYDVGHVGGEPKTVTVNVQ 180
           IFDVDMEDFVHGRRTLFAVCAYALLKAIPGLRALVDDIPHHSYDVGHVGGEPKTVTVNVQ
Sbjct: 121 IFDVDMEDFVHGRRTLFAVCAYALLKAIPGLRALVDDIPHHSYDVGHVGGEPKTVTVNVQ 180

Query: 181 ALMDELLSEIDYWCLEKDYENSMNMVLMQVSFTQQTNDLLLFESSTKWGCYNCAVHFTRM 240
           ALMDELLSEIDYWCLEKDYENSMNMVLMQVSFTQQTNDLLLFESSTKWGCYNCAVHFTRM
Sbjct: 181 ALMDELLSEIDYWCLEKDYENSMNMVLMQVSFTQQTNDLLLFESSTKWGCYNCAVHFTRM 240

Query: 241 ECSKSIYMDGRSVSEFEEECYLDCHECKIAVGYKRMKVCKLPQVLNFYEVSGLLPELRIL 300
           ECSKSIYMDGRSVSEFEEECYLDCHECKIAVGYKRMKVCKLPQVLNFYEVSGLLPELRIL
Sbjct: 241 ECSKSIYMDGRSVSEFEEECYLDCHECKIAVGYKRMKVCKLPQVLNFYEVSGLLPELRIL 300

Query: 301 NQFLTAHLLHLSVQCPSVSTRPCITTADPGQMRNCNVPKDLMREATDK 348
           NQFLTAHLLHLSVQCPSVSTRPCITTADPGQMRNCNVPKDLMREATDK
Sbjct: 301 NQFLTAHLLHLSVQCPSVSTRPCITTADPGQMRNCNVPKDLMREATDK 348



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.323    0.136    0.438 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,702,427
Number of extensions: 457057
Number of successful extensions: 1064
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1063
Number of HSP's successfully gapped: 1
Length of query: 348
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 246
Effective length of database: 11,709,973
Effective search space: 2880653358
Effective search space used: 2880653358
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 156 (64.7 bits)