Os05g0569000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os05g0569000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 92.02 | 0.451 | 7.51 | 0.466 | 0.476 | -1.12 | 0.145 | -0.193 | 0.666 | 0.0969 | 25.6 | 820 | -- | -- |
| 91.93 | 0.447 | 7.5 | 0.521 | 0.488 | -1.15 | 0.124 | -- | 0.687 | 0.384 | 25.64 | 847 | -- | -- |
| 92 | 0.447 | 7.5 | 0.485 | 0.492 | -1.14 | -- | -0.0888 | 0.675 | 0.4 | 25.63 | 846 | -- | -- |
| 91.99 | 0.447 | 7.5 | 0.515 | 0.486 | -1.14 | -- | -- | 0.685 | 0.388 | 25.65 | 847 | -- | -- |
| 101.05 | 0.468 | 7.51 | 0.467 | -- | -0.916 | -- | -0.29 | 0.55 | -- | 27.1 | 1869 | -- | -- |
| 130.23 | 0.535 | 7.57 | 0.181 | 0.304 | -- | 0.301 | -- | 0.293 | 5.09 | -- | -- | -- | -- |
| 130.45 | 0.535 | 7.58 | 0.181 | 0.305 | -- | -- | -- | 0.292 | 5.03 | -- | -- | -- | -- |
| 98.6 | 0.462 | 7.52 | 0.537 | -- | -1.01 | -- | -- | 0.465 | -- | 28.5 | 1873 | -- | -- |
| 98.5 | 0.462 | 7.5 | -- | 0.471 | -1.04 | -- | -- | 0.63 | 0.698 | 25.5 | 847 | -- | -- |
| 135.35 | 0.544 | 7.58 | 0.192 | -- | -- | -- | -- | 0.299 | -- | -- | -- | -- | -- |
| 131.31 | 0.536 | 7.58 | -- | 0.309 | -- | -- | -- | 0.271 | 5.01 | -- | -- | -- | -- |
| 103.8 | 0.475 | 7.56 | -- | -- | -0.938 | -- | -- | 0.362 | -- | 28.95 | 1863 | -- | -- |
| 136.32 | 0.545 | 7.58 | -- | -- | -- | -- | -- | 0.278 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 94.01 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 15 | 19 |
| 3 | 94.32 | temperature | 25.0 | 720 | > th | dose independent | rect. | 13 | 21 |
| 4 | 94.40 | temperature | 25.0 | 720 | > th | dose independent | rect. | 15 | 19 |
| 13 | 95.02 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 13 | 2 |
| 19 | 95.29 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 13 | 2 |
| 25 | 95.53 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 11 | 4 |
| 28 | 95.55 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 33 | 95.70 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 23 | 17 |
| 37 | 95.73 | temperature | 25.0 | 720 | > th | dose dependent | sin | 10 | NA |
| 45 | 95.80 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 10 | 19 |
| 150 | 96.17 | temperature | 25.0 | 1440 | > th | dose dependent | no | NA | NA |
| 186 | 96.27 | temperature | 25.0 | 1440 | > th | dose dependent | sin | 21 | NA |
| 195 | 96.28 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 17 | 16 |
| 236 | 96.38 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 7 | 18 |
| 251 | 96.42 | temperature | 25.0 | 720 | > th | dose independent | rect. | 6 | 22 |
| 335 | 96.62 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 17 | 12 |
| 336 | 96.62 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 17 | 16 |
| 338 | 96.63 | temperature | 25.0 | 4320 | > th | dose dependent | sin | 11 | NA |
| 370 | 96.71 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 13 | 23 |
| 398 | 96.85 | temperature | 25.0 | 720 | > th | dose independent | rect. | 1 | 23 |
| 434 | 96.98 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 17 | 16 |
| 440 | 97.00 | temperature | 25.0 | 720 | > th | dose independent | no | NA | NA |
| 491 | 97.15 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 17 | 12 |
| 538 | 97.29 | temperature | 25.0 | 4320 | > th | dose independent | sin | 10 | NA |
| 561 | 97.35 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 17 | 4 |
| 567 | 97.37 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 574 | 97.38 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 6 | 10 |
| 577 | 97.38 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 2 | 14 |
| 588 | 97.39 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 23 | 17 |
| 619 | 97.44 | temperature | 25.0 | 720 | < th | dose independent | rect. | 13 | 21 |
| 627 | 97.46 | temperature | 25.0 | 720 | < th | dose independent | rect. | 3 | 21 |
| 639 | 97.49 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 743 | 97.66 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 11 | 20 |
| 748 | 97.66 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 6 | 23 |
| 750 | 97.67 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 11 | 12 |
| 772 | 97.68 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 11 | 16 |
| 789 | 97.70 | temperature | 25.0 | 720 | < th | dose independent | rect. | 3 | 23 |
| 798 | 97.71 | temperature | 25.0 | 720 | > th | dose independent | rect. | 21 | 23 |
| 830 | 97.77 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 16 | 2 |
| 888 | 97.84 | temperature | 25.0 | 720 | < th | dose independent | rect. | 1 | 23 |
| 927 | 97.88 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 1 | 9 |
| 997 | 97.94 | temperature | 30.0 | 1440 | < th | dose independent | sin | 22 | NA |
| 998 | 97.94 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 3 | 6 |