BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0551100 Os05g0551100|AK066555
         (807 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os05g0551100  Conserved hypothetical protein                     1470   0.0  

>Os05g0551100 Conserved hypothetical protein
          Length = 807

 Score = 1470 bits (3806), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 718/788 (91%), Positives = 718/788 (91%)

Query: 20  IVERQKPATSCVASLFQMXXXXXXXXXXXXXXXXXPPVRTQKFSPGRPPAGGEKTPAAKM 79
           IVERQKPATSCVASLFQM                 PPVRTQKFSPGRPPAGGEKTPAAKM
Sbjct: 20  IVERQKPATSCVASLFQMLAKKKLFSSSSKKTKLLPPVRTQKFSPGRPPAGGEKTPAAKM 79

Query: 80  RTLLLDAPYYPNEVTTRLPPPGQDNKSSEMCTPGVVARLMGLSAMPATSHQKAVKTMDAS 139
           RTLLLDAPYYPNEVTTRLPPPGQDNKSSEMCTPGVVARLMGLSAMPATSHQKAVKTMDAS
Sbjct: 80  RTLLLDAPYYPNEVTTRLPPPGQDNKSSEMCTPGVVARLMGLSAMPATSHQKAVKTMDAS 139

Query: 140 ELGGHRSECSYGSIYNSHQKQQKPGHIRDGRHDNGNQLDADAQPVWSRKHAAHKLASPIK 199
           ELGGHRSECSYGSIYNSHQKQQKPGHIRDGRHDNGNQLDADAQPVWSRKHAAHKLASPIK
Sbjct: 140 ELGGHRSECSYGSIYNSHQKQQKPGHIRDGRHDNGNQLDADAQPVWSRKHAAHKLASPIK 199

Query: 200 SPRSVSSRNKVRLIEAAVKVLEPGLQSXXXXXXXXXXXLEYRCNSSDVQSAAEAMHDFSD 259
           SPRSVSSRNKVRLIEAAVKVLEPGLQS           LEYRCNSSDVQSAAEAMHDFSD
Sbjct: 200 SPRSVSSRNKVRLIEAAVKVLEPGLQSRHHHQARRQARLEYRCNSSDVQSAAEAMHDFSD 259

Query: 260 QFAREMCDVDASRSGAQNVGATSLHNSTSNQWSEEDTMRNVSVRRPNQNISCQAQSEGNH 319
           QFAREMCDVDASRSGAQNVGATSLHNSTSNQWSEEDTMRNVSVRRPNQNISCQAQSEGNH
Sbjct: 260 QFAREMCDVDASRSGAQNVGATSLHNSTSNQWSEEDTMRNVSVRRPNQNISCQAQSEGNH 319

Query: 320 KGQRNGFKDSGQRTSDDVLVSSQGVQKIQPKNISRENVDCRPLKQNNLKQNALPETYRAA 379
           KGQRNGFKDSGQRTSDDVLVSSQGVQKIQPKNISRENVDCRPLKQNNLKQNALPETYRAA
Sbjct: 320 KGQRNGFKDSGQRTSDDVLVSSQGVQKIQPKNISRENVDCRPLKQNNLKQNALPETYRAA 379

Query: 380 DTGHMVQRQKHRAKEQNVANTANDFVCSNRGMNNSASLRSKGKVKDKIGMPHGSAENRNL 439
           DTGHMVQRQKHRAKEQNVANTANDFVCSNRGMNNSASLRSKGKVKDKIGMPHGSAENRNL
Sbjct: 380 DTGHMVQRQKHRAKEQNVANTANDFVCSNRGMNNSASLRSKGKVKDKIGMPHGSAENRNL 439

Query: 440 STKCHRTSGLHGDCSNKQISKTATLKATEKDMIIAKGAGLVSEKPKSTSPNSVRNDSRRK 499
           STKCHRTSGLHGDCSNKQISKTATLKATEKDMIIAKGAGLVSEKPKSTSPNSVRNDSRRK
Sbjct: 440 STKCHRTSGLHGDCSNKQISKTATLKATEKDMIIAKGAGLVSEKPKSTSPNSVRNDSRRK 499

Query: 500 VESRIASRXXXXXXXXXXXXXPRKAVLALLNGHTKGSDSVVLGSPTGSCPKRDYRRDCQN 559
           VESRIASR             PRKAVLALLNGHTKGSDSVVLGSPTGSCPKRDYRRDCQN
Sbjct: 500 VESRIASRGNNSGIISISSNSPRKAVLALLNGHTKGSDSVVLGSPTGSCPKRDYRRDCQN 559

Query: 560 ISSERELVLSEALQGISSLESAESVCFNRNELRNREILDDRVMSSLFRKTSAINVMEESP 619
           ISSERELVLSEALQGISSLESAESVCFNRNELRNREILDDRVMSSLFRKTSAINVMEESP
Sbjct: 560 ISSERELVLSEALQGISSLESAESVCFNRNELRNREILDDRVMSSLFRKTSAINVMEESP 619

Query: 620 SDEFLWQCNFLDSLTFGFREVPRSGKLRETHKKHEVTTNASDPSYYADDECFSGSLLKTA 679
           SDEFLWQCNFLDSLTFGFREVPRSGKLRETHKKHEVTTNASDPSYYADDECFSGSLLKTA
Sbjct: 620 SDEFLWQCNFLDSLTFGFREVPRSGKLRETHKKHEVTTNASDPSYYADDECFSGSLLKTA 679

Query: 680 ASEAGFRDRRRSENCTMQQDGTNKRNSRCSETNFGQDSSNLIHPGEVAATVELLLTNVXX 739
           ASEAGFRDRRRSENCTMQQDGTNKRNSRCSETNFGQDSSNLIHPGEVAATVELLLTNV  
Sbjct: 680 ASEAGFRDRRRSENCTMQQDGTNKRNSRCSETNFGQDSSNLIHPGEVAATVELLLTNVRR 739

Query: 740 XXXXXXXXXXXXXXXXXXXXXXXXXXXQKGRRAGARWEASRSIPSWSAWTRCSPSSATQD 799
                                      QKGRRAGARWEASRSIPSWSAWTRCSPSSATQD
Sbjct: 740 STSTTPPRRRRRRRRTGSASTPASSRPQKGRRAGARWEASRSIPSWSAWTRCSPSSATQD 799

Query: 800 TGRSRGFP 807
           TGRSRGFP
Sbjct: 800 TGRSRGFP 807



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.312    0.125    0.362 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 24,711,802
Number of extensions: 964448
Number of successful extensions: 2045
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 2043
Number of HSP's successfully gapped: 1
Length of query: 807
Length of database: 17,035,801
Length adjustment: 109
Effective length of query: 698
Effective length of database: 11,344,475
Effective search space: 7918443550
Effective search space used: 7918443550
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 160 (66.2 bits)