BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0546300 Os05g0546300|AK108536
         (226 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os05g0546300  Conserved hypothetical protein                      158   4e-39

>Os05g0546300 Conserved hypothetical protein
          Length = 226

 Score =  158 bits (399), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 106/226 (46%), Positives = 106/226 (46%)

Query: 1   MEASSSPCKXXXXXXXXXXXXXXXXXXQARPLGHQVVVAPLMLPSDXXXXXXXXXRPEDH 60
           MEASSSPCK                  QARPLGHQVVVAPLMLPSD         RPEDH
Sbjct: 1   MEASSSPCKLLLLLLLHVVLLAFAPLLQARPLGHQVVVAPLMLPSDGGEVVGGVGRPEDH 60

Query: 61  IPPSPFAPGGPITLAGGWLVGRXXXXXXXXXXXXXXXXXXQLAADDDXXXXXXXXXXXXX 120
           IPPSPFAPGGPITLAGGWLVGR                  QLAADDD             
Sbjct: 61  IPPSPFAPGGPITLAGGWLVGRPVGPTPPPPSHPVVPTPTQLAADDDGGLLRRPGGPTPP 120

Query: 121 XXXXXXXXXQTQLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSNYGVSXXXXXXXX 180
                    QTQLA                               LSNYGVS        
Sbjct: 121 SPWHPGVPTQTQLAGGDDGGVGGLLGRPWPKAPPPPDPNTPPVQPLSNYGVSRCCGRPGP 180

Query: 181 XXXXXXXXXXXXXXVAVALAPPIPCAAFLRVIRDAVQYMVGGGLGA 226
                         VAVALAPPIPCAAFLRVIRDAVQYMVGGGLGA
Sbjct: 181 APPTPAGNPPGETNVAVALAPPIPCAAFLRVIRDAVQYMVGGGLGA 226



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.319    0.137    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,200,678
Number of extensions: 116163
Number of successful extensions: 187
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 184
Number of HSP's successfully gapped: 1
Length of query: 226
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 129
Effective length of database: 11,971,043
Effective search space: 1544264547
Effective search space used: 1544264547
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 154 (63.9 bits)