Os05g0546300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os05g0546300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 121.02 | 0.517 | 12.3 | 0.902 | 1.84 | -1.39 | 0.362 | -0.618 | 0.41 | 9.03 | 0.9698 | 4371 | -- | -- |
| 121.28 | 0.513 | 12.3 | 0.806 | 1.82 | -1.34 | 0.418 | -- | 0.383 | 8.96 | 1.322 | 4383 | -- | -- |
| 121.46 | 0.513 | 12.3 | 0.917 | 1.84 | -1.39 | -- | -0.628 | 0.404 | 9.03 | 1.039 | 4371 | -- | -- |
| 121.71 | 0.514 | 12.3 | 0.837 | 1.84 | -1.28 | -- | -- | 0.399 | 9.01 | 1.33 | 4380 | -- | -- |
| 209.93 | 0.679 | 12.3 | 1.17 | -- | -1.18 | -- | 0.222 | 0.635 | -- | 1.039 | 4371 | -- | -- |
| 151.58 | 0.577 | 12.3 | 1.21 | 1.9 | -- | 0.347 | -- | 0.637 | 9.13 | -- | -- | -- | -- |
| 152 | 0.577 | 12.3 | 1.22 | 1.9 | -- | -- | -- | 0.638 | 9.14 | -- | -- | -- | -- |
| 210.24 | 0.678 | 12.3 | 1.18 | -- | -1.17 | -- | -- | 0.636 | -- | 1.039 | 4371 | -- | -- |
| 127.15 | 0.525 | 12.3 | -- | 1.81 | -1.24 | -- | -- | 0.432 | 8.97 | 0.01 | 34698 | -- | -- |
| 360.94 | 0.888 | 12.3 | 1.22 | -- | -- | -- | -- | 0.648 | -- | -- | -- | -- | -- |
| 191.44 | 0.647 | 12.3 | -- | 1.9 | -- | -- | -- | 0.502 | 9.09 | -- | -- | -- | -- |
| 240.4 | 0.724 | 12.4 | -- | -- | -1.21 | -- | -- | 0.451 | -- | 0.09839 | 4493 | -- | -- |
| 400.06 | 0.934 | 12.4 | -- | -- | -- | -- | -- | 0.513 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 116.37 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 10 | 5 |
| 2 | 116.39 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 10 | 5 |
| 6 | 116.59 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 2 | 15 |
| 7 | 116.62 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 8 | 8 |
| 15 | 116.67 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 18 | 116.69 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 8 | 9 |
| 21 | 116.71 | atmosphere | 1005 | 43200 | > th | dose independent | sin | 1 | NA |
| 47 | 116.82 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 2 | 17 |
| 72 | 116.90 | atmosphere | 1005 | 43200 | < th | dose independent | sin | 0 | NA |
| 152 | 117.11 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 2 | 2 |
| 190 | 117.20 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 8 | 21 |
| 205 | 117.22 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 8 | 21 |
| 232 | 117.27 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 2 | 1 |
| 245 | 117.29 | atmosphere | 1005 | 43200 | > th | dose independent | no | NA | NA |
| 268 | 117.32 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 13 | 23 |
| 277 | 117.33 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 4 | 23 |
| 280 | 117.34 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 2 | 3 |
| 285 | 117.35 | humidity | 80 | 43200 | > th | dose independent | rect. | 15 | 2 |
| 298 | 117.36 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 4 | 1 |
| 299 | 117.36 | humidity | 80 | 43200 | > th | dose independent | rect. | 13 | 4 |
| 308 | 117.36 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 16 | 23 |
| 328 | 117.38 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 18 | 23 |
| 350 | 117.43 | wind | 5 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 364 | 117.45 | atmosphere | 1005 | 43200 | < th | dose independent | no | NA | NA |
| 372 | 117.46 | wind | 5 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 400 | 117.49 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 13 | 23 |
| 426 | 117.53 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 16 | 23 |
| 441 | 117.56 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 455 | 117.59 | radiation | 1 | 14400 | < th | dose independent | rect. | 7 | 7 |
| 467 | 117.61 | radiation | 1 | 14400 | > th | dose independent | rect. | 7 | 7 |
| 512 | 117.70 | atmosphere | 1010 | 43200 | < th | dose dependent | rect. | 10 | 5 |
| 514 | 117.71 | humidity | 80 | 43200 | < th | dose independent | rect. | 13 | 4 |
| 515 | 117.71 | wind | 3 | 43200 | > th | dose dependent | rect. | 12 | 1 |
| 527 | 117.73 | humidity | 90 | 14400 | > th | dose dependent | rect. | 1 | 2 |
| 540 | 117.76 | atmosphere | 1015 | 43200 | < th | dose dependent | rect. | 10 | 1 |
| 579 | 117.84 | atmosphere | 1010 | 43200 | < th | dose dependent | rect. | 13 | 1 |
| 687 | 118.04 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 18 | 3 |
| 699 | 118.07 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 16 | 7 |
| 711 | 118.09 | atmosphere | 1000 | 43200 | > th | dose dependent | rect. | 10 | 1 |
| 717 | 118.10 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 18 | 3 |
| 769 | 118.16 | wind | 9 | 43200 | < th | dose dependent | rect. | 11 | 2 |
| 778 | 118.17 | humidity | 90 | 14400 | > th | dose dependent | rect. | 24 | 6 |
| 807 | 118.22 | atmosphere | 1010 | 43200 | < th | dose dependent | rect. | 16 | 1 |
| 844 | 118.27 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 16 | 7 |
| 849 | 118.27 | atmosphere | 1010 | 43200 | < th | dose dependent | sin | 0 | NA |
| 851 | 118.27 | atmosphere | 1000 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 866 | 118.28 | atmosphere | 1000 | 43200 | > th | dose dependent | rect. | 10 | 5 |
| 885 | 118.31 | wind | 5 | 43200 | > th | dose dependent | rect. | 14 | 1 |