BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0533800 Os05g0533800|Os05g0533800
(125 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0533800 ATPase, F0 complex, subunit G, mitochondrial f... 238 7e-64
Os01g0600000 Similar to Copia-like retroelement pol polypro... 184 1e-47
Os01g0720100 168 1e-42
>Os05g0533800 ATPase, F0 complex, subunit G, mitochondrial family protein
Length = 125
Score = 238 bits (607), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 114/125 (91%), Positives = 114/125 (91%)
Query: 1 MAALASKLAQMQXXXXXXXXXXXKHGCAYHRALMEKNQKYVADPPTIERCQELSKQLFYT 60
MAALASKLAQMQ KHGCAYHRALMEKNQKYVADPPTIERCQELSKQLFYT
Sbjct: 1 MAALASKLAQMQAKACDAARFAAKHGCAYHRALMEKNQKYVADPPTIERCQELSKQLFYT 60
Query: 61 RLASLPGRYEAFWKEADQVKNLWRNRKDLNVEHAGVAALFGIELYAWFCVGEIVGRGFTF 120
RLASLPGRYEAFWKEADQVKNLWRNRKDLNVEHAGVAALFGIELYAWFCVGEIVGRGFTF
Sbjct: 61 RLASLPGRYEAFWKEADQVKNLWRNRKDLNVEHAGVAALFGIELYAWFCVGEIVGRGFTF 120
Query: 121 TGYHV 125
TGYHV
Sbjct: 121 TGYHV 125
>Os01g0600000 Similar to Copia-like retroelement pol polyprotein
Length = 122
Score = 184 bits (467), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 81/122 (66%), Positives = 98/122 (80%)
Query: 4 LASKLAQMQXXXXXXXXXXXKHGCAYHRALMEKNQKYVADPPTIERCQELSKQLFYTRLA 63
+AS+LAQ++ KHGCAY++ +MEKN+++V PPT+E+CQELSKQLFYTRLA
Sbjct: 1 MASRLAQLRSKAAQASELVSKHGCAYYKEVMEKNKQHVVQPPTVEKCQELSKQLFYTRLA 60
Query: 64 SLPGRYEAFWKEADQVKNLWRNRKDLNVEHAGVAALFGIELYAWFCVGEIVGRGFTFTGY 123
SLPGRYEAFWKE D VK +W+NRK+L VE G+ LFG+ELYAWFCVGEIVGRGFT TGY
Sbjct: 61 SLPGRYEAFWKEFDGVKQVWKNRKELKVEDLGIVTLFGVELYAWFCVGEIVGRGFTITGY 120
Query: 124 HV 125
V
Sbjct: 121 KV 122
>Os01g0720100
Length = 156
Score = 168 bits (425), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 78/118 (66%), Positives = 90/118 (76%), Gaps = 2/118 (1%)
Query: 10 QMQXXXXXXXXXXXKHGCAYHRALMEKNQKYVADPPTIERCQELSKQLFYTRLASLPGRY 69
Q+Q KHG A+H LME+N++YV DPPTI+ CQELSKQLFYTRLAS+PGRY
Sbjct: 39 QLQSRACEATRSAAKHGRAFHEELMERNKRYVIDPPTIQTCQELSKQLFYTRLASIPGRY 98
Query: 70 EAFWKEADQVKNLWRNRKDLNV--EHAGVAALFGIELYAWFCVGEIVGRGFTFTGYHV 125
E+FWKE D K LW+NRK+LN+ E GVA LFGIEL AWF GE+VGRGFTFTGYHV
Sbjct: 99 ESFWKEVDGAKLLWKNRKNLNLKAEDIGVATLFGIELIAWFAGGEVVGRGFTFTGYHV 156
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.324 0.136 0.434
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,865,317
Number of extensions: 127761
Number of successful extensions: 288
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 287
Number of HSP's successfully gapped: 3
Length of query: 125
Length of database: 17,035,801
Length adjustment: 88
Effective length of query: 37
Effective length of database: 12,440,969
Effective search space: 460315853
Effective search space used: 460315853
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 149 (62.0 bits)