BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0518200 Os05g0518200|AK107178
(1055 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0518200 Conserved hypothetical protein 1901 0.0
>Os05g0518200 Conserved hypothetical protein
Length = 1055
Score = 1901 bits (4924), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 944/1055 (89%), Positives = 944/1055 (89%)
Query: 1 MAAAGVPFSIXXXXXXXXXXXXXXXXXCWPFAGKAGALPPMEVRGFXXXXXXXXXXXXXX 60
MAAAGVPFSI CWPFAGKAGALPPMEVRGF
Sbjct: 1 MAAAGVPFSIRGYAARARAGAADEGGRCWPFAGKAGALPPMEVRGFRWWEDEAAALAEEE 60
Query: 61 XXXXXXXXXXXXXXSIVELFAAVPKVVAAADEXXXXXXXXXXXXXXXXPPAVGVEAAKKK 120
SIVELFAAVPKVVAAADE PPAVGVEAAKKK
Sbjct: 61 GEEERRLAAKRRKRSIVELFAAVPKVVAAADEGLGRGKRVRRKLDKGDPPAVGVEAAKKK 120
Query: 121 GFRKQKVLVEIGVRKKGKNSKTKVTSASMSQLFQNAIXXXXXXXXXXXXGVPLEKKSMKG 180
GFRKQKVLVEIGVRKKGKNSKTKVTSASMSQLFQNAI GVPLEKKSMKG
Sbjct: 121 GFRKQKVLVEIGVRKKGKNSKTKVTSASMSQLFQNAIQKQKKKSLSKKKGVPLEKKSMKG 180
Query: 181 NXXXXXXXXXXXXXXCHVQSILKKHLKTGVGTLLKNTDVMSPSKSLLKPKRVTFSDDNDI 240
N CHVQSILKKHLKTGVGTLLKNTDVMSPSKSLLKPKRVTFSDDNDI
Sbjct: 181 NKTTTLSSQKTTKSSCHVQSILKKHLKTGVGTLLKNTDVMSPSKSLLKPKRVTFSDDNDI 240
Query: 241 LGRTDSQLGDGTEKSQLLQTSQQHYKDGKSQGGDNHCSTYEPQFSYQRAGAIVDSVEEDT 300
LGRTDSQLGDGTEKSQLLQTSQQHYKDGKSQGGDNHCSTYEPQFSYQRAGAIVDSVEEDT
Sbjct: 241 LGRTDSQLGDGTEKSQLLQTSQQHYKDGKSQGGDNHCSTYEPQFSYQRAGAIVDSVEEDT 300
Query: 301 SSTVLLTKSKEKTILANPVDLNHCLEXXXXXXXXXXXXXAVLSGQVLPQNFAGVGSIPNE 360
SSTVLLTKSKEKTILANPVDLNHCLE AVLSGQVLPQNFAGVGSIPNE
Sbjct: 301 SSTVLLTKSKEKTILANPVDLNHCLEISSSGSCLNSINSAVLSGQVLPQNFAGVGSIPNE 360
Query: 361 GSNVHVGFQAEENHHKYHGSSVGASLAVKARSSDLIRRQLPEPSSSCFVASLRVNDGNRS 420
GSNVHVGFQAEENHHKYHGSSVGASLAVKARSSDLIRRQLPEPSSSCFVASLRVNDGNRS
Sbjct: 361 GSNVHVGFQAEENHHKYHGSSVGASLAVKARSSDLIRRQLPEPSSSCFVASLRVNDGNRS 420
Query: 421 KMLQERLTALHPRLIRSKDMVNXXXXXXXXXXXTDAQTPNCVSACRNMHSEGYQGLPLNS 480
KMLQERLTALHPRLIRSKDMVN TDAQTPNCVSACRNMHSEGYQGLPLNS
Sbjct: 421 KMLQERLTALHPRLIRSKDMVNSISSSAGSNKSTDAQTPNCVSACRNMHSEGYQGLPLNS 480
Query: 481 HGEFVKLHPSGTIDPNGMFKRQFPVGDYVRPSAFPAFITPETCVDYAHLKSSYQGPQFCA 540
HGEFVKLHPSGTIDPNGMFKRQFPVGDYVRPSAFPAFITPETCVDYAHLKSSYQGPQFCA
Sbjct: 481 HGEFVKLHPSGTIDPNGMFKRQFPVGDYVRPSAFPAFITPETCVDYAHLKSSYQGPQFCA 540
Query: 541 VDTFDFQSEPYHSPTASAAYGMGFRQSPSSERMEVHGYAVPSNNDPYSNQQELSVGCFCP 600
VDTFDFQSEPYHSPTASAAYGMGFRQSPSSERMEVHGYAVPSNNDPYSNQQELSVGCFCP
Sbjct: 541 VDTFDFQSEPYHSPTASAAYGMGFRQSPSSERMEVHGYAVPSNNDPYSNQQELSVGCFCP 600
Query: 601 AFTGQGNQTHKPLEMQNCFPSQHYEQNSQPAPETTVRLMGKNFTLGTSSNQFRGLDNKNP 660
AFTGQGNQTHKPLEMQNCFPSQHYEQNSQPAPETTVRLMGKNFTLGTSSNQFRGLDNKNP
Sbjct: 601 AFTGQGNQTHKPLEMQNCFPSQHYEQNSQPAPETTVRLMGKNFTLGTSSNQFRGLDNKNP 660
Query: 661 CPSKQSRDEDHGTSAKAFSQLFHGTRVEPPSTLRNSNGGVEHPSRFSSVPEAELRCGLDS 720
CPSKQSRDEDHGTSAKAFSQLFHGTRVEPPSTLRNSNGGVEHPSRFSSVPEAELRCGLDS
Sbjct: 661 CPSKQSRDEDHGTSAKAFSQLFHGTRVEPPSTLRNSNGGVEHPSRFSSVPEAELRCGLDS 720
Query: 721 YSFRTSDRYQQPHLAVQNKLYVNPVSRHNESEPWQQQLHVENHILGASEPQLLGTMHLRQ 780
YSFRTSDRYQQPHLAVQNKLYVNPVSRHNESEPWQQQLHVENHILGASEPQLLGTMHLRQ
Sbjct: 721 YSFRTSDRYQQPHLAVQNKLYVNPVSRHNESEPWQQQLHVENHILGASEPQLLGTMHLRQ 780
Query: 781 SKTAATVPSYSPKHNFSNLVEIRPARSQFAYFPRQNVTQRTPISSFLSGYAVQSSPGLTT 840
SKTAATVPSYSPKHNFSNLVEIRPARSQFAYFPRQNVTQRTPISSFLSGYAVQSSPGLTT
Sbjct: 781 SKTAATVPSYSPKHNFSNLVEIRPARSQFAYFPRQNVTQRTPISSFLSGYAVQSSPGLTT 840
Query: 841 PTKFTSLRPLPPSVTSSHVYSSEDAQPHGSVPPFYPSIALSDQASKNCDPGDLKDNRSMQ 900
PTKFTSLRPLPPSVTSSHVYSSEDAQPHGSVPPFYPSIALSDQASKNCDPGDLKDNRSMQ
Sbjct: 841 PTKFTSLRPLPPSVTSSHVYSSEDAQPHGSVPPFYPSIALSDQASKNCDPGDLKDNRSMQ 900
Query: 901 QTPITSNHDSSEQLNRGFKRPAVEDDVFLKPRKSFIAVGKDLNLLPLQEERLGLCGSRPD 960
QTPITSNHDSSEQLNRGFKRPAVEDDVFLKPRKSFIAVGKDLNLLPLQEERLGLCGSRPD
Sbjct: 901 QTPITSNHDSSEQLNRGFKRPAVEDDVFLKPRKSFIAVGKDLNLLPLQEERLGLCGSRPD 960
Query: 961 AQLPVCLSKDSEVDVQLLNNDTQIAWSDSVNRVRTILPVKLRSGAKHILEPGASPTATLG 1020
AQLPVCLSKDSEVDVQLLNNDTQIAWSDSVNRVRTILPVKLRSGAKHILEPGASPTATLG
Sbjct: 961 AQLPVCLSKDSEVDVQLLNNDTQIAWSDSVNRVRTILPVKLRSGAKHILEPGASPTATLG 1020
Query: 1021 QEESWPLHSIKTFVVEDDAHAVGTSKKRDEEICRV 1055
QEESWPLHSIKTFVVEDDAHAVGTSKKRDEEICRV
Sbjct: 1021 QEESWPLHSIKTFVVEDDAHAVGTSKKRDEEICRV 1055
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.314 0.129 0.381
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 34,277,998
Number of extensions: 1483303
Number of successful extensions: 2550
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 2547
Number of HSP's successfully gapped: 1
Length of query: 1055
Length of database: 17,035,801
Length adjustment: 111
Effective length of query: 944
Effective length of database: 11,240,047
Effective search space: 10610604368
Effective search space used: 10610604368
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 161 (66.6 bits)