FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0518200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.76 (0.033) R2 : 0.249
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.963 (0.0808) R2dC : 0.235 R2C : 0.23
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.208 (0.0694) R2dN8 : 0.0192 R2N8 : 0.0138
σ : 0.622
deviance : 176.73
__
_____
C
peak time of C : 21.7
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
160.4 0.595 3.77 -0.326 0.971 -1.24 -1.08 -3.17 -0.213 21.6 995.9 5024 -- --
163.36 0.595 3.77 -0.355 0.971 -0.78 -1.09 -- -0.213 21.6 996.1 5873 -- --
164.58 0.597 3.77 -0.306 0.968 -1.21 -- -3.04 -0.213 21.7 996 4918 -- --
167.82 0.603 3.76 -0.316 0.975 -0.785 -- -- -0.211 21.7 996.3 5729 -- --
220.86 0.692 3.74 -0.275 -- -1.23 -- -3.19 -0.218 -- 995.7 5276 -- --
169.56 0.61 3.77 -0.356 0.96 -- -1.1 -- -0.245 21.6 -- -- -- --
174.11 0.618 3.77 -0.316 0.964 -- -- -- -0.244 21.7 -- -- -- --
224.04 0.697 3.74 -0.308 -- -0.683 -- -- -0.216 -- 996.1 6616 -- --
170.42 0.608 3.76 -- 0.974 -0.788 -- -- -0.177 21.7 996 5978 -- --
229.3 0.708 3.75 -0.307 -- -- -- -- -0.245 -- -- -- -- --
176.73 0.622 3.76 -- 0.963 -- -- -- -0.208 21.7 -- -- -- --
226.54 0.701 3.73 -- -- -0.696 -- -- -0.183 -- 995.9 6473 -- --
231.78 0.711 3.74 -- -- -- -- -- -0.211 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 155.47 atmosphere 1000 90 < th dose independent rect. 5 2
2 155.49 atmosphere 1000 90 < th dose dependent rect. 5 2
6 156.54 atmosphere 1000 10 < th dose dependent rect. 5 3
7 156.59 atmosphere 1000 10 < th dose independent rect. 5 3
9 156.66 wind 7 10 > th dose dependent rect. 18 2
26 157.09 temperature 25 4320 > th dose independent rect. 24 1
28 157.16 temperature 25 4320 < th dose independent rect. 2 1
90 157.71 temperature 25 4320 > th dose dependent rect. 24 1
124 157.85 temperature 25 270 > th dose dependent rect. 4 1
126 157.91 wind 9 10 > th dose independent rect. 18 2
133 158.20 atmosphere 1000 10 < th dose independent rect. 5 1
140 158.20 atmosphere 1000 10 < th dose dependent rect. 5 1
166 158.32 wind 9 90 > th dose independent rect. 18 8
186 158.39 wind 9 90 > th dose independent rect. 18 5
201 158.45 temperature 25 720 > th dose independent rect. 24 3
211 158.60 temperature 25 30 > th dose dependent rect. 5 1
229 158.66 temperature 20 90 < th dose independent rect. 6 1
284 159.02 humidity 80 14400 < th dose dependent rect. 4 1
285 159.03 temperature 20 90 < th dose dependent rect. 6 1
286 159.05 wind 9 10 > th dose dependent sin 11 NA
320 159.33 humidity 80 14400 < th dose dependent rect. 1 1
327 159.39 wind 9 10 > th dose independent sin 12 NA
330 159.42 wind 7 10 > th dose independent rect. 16 5
338 159.48 humidity 80 14400 < th dose dependent rect. 24 5
339 159.49 wind 9 10 < th dose independent sin 14 NA
351 159.56 humidity 80 14400 < th dose dependent rect. 21 11
354 159.57 humidity 80 14400 < th dose dependent rect. 24 8
370 159.63 humidity 80 14400 < th dose dependent rect. 21 9
373 159.66 humidity 80 14400 < th dose independent rect. 24 9
399 159.75 wind 7 10 > th dose independent rect. 16 13
413 159.78 humidity 90 10 < th dose dependent rect. 17 3
425 159.83 humidity 70 270 < th dose dependent rect. 16 1
435 159.88 humidity 80 14400 > th dose independent rect. 23 10
438 159.89 radiation 20 270 > th dose dependent rect. 16 1
442 159.89 radiation 1 90 < th dose dependent rect. 6 4
449 159.89 atmosphere 1005 90 < th dose dependent rect. 4 9
457 159.90 radiation 1 90 < th dose dependent rect. 7 2
471 159.95 atmosphere 995 1440 > th dose independent rect. 18 2
490 160.02 temperature 25 270 < th dose independent rect. 21 7
493 160.02 humidity 80 270 < th dose dependent rect. 15 3
538 160.06 atmosphere 995 30 > th dose dependent rect. 3 14
539 160.07 humidity 60 270 < th dose independent rect. 16 1
540 160.08 temperature 25 1440 > th dose dependent rect. 3 3
576 160.14 atmosphere 1000 30 > th dose independent rect. 3 14
577 160.16 humidity 90 720 < th dose independent rect. 24 2
608 160.25 temperature 25 270 > th dose independent rect. 4 2
628 160.32 humidity 80 14400 > th dose independent rect. 24 1
631 160.32 radiation 1 30 > th dose dependent rect. 18 1
679 160.47 temperature 25 1440 > th dose dependent rect. 5 1
711 160.50 atmosphere 995 1440 > th dose independent rect. 18 5
718 160.52 temperature 25 270 < th dose independent rect. 18 10
727 160.56 temperature 25 30 > th dose independent rect. 5 1
729 160.56 wind 9 14400 > th dose dependent rect. 12 2
745 160.62 atmosphere 1000 270 > th dose independent rect. 18 23
759 160.66 humidity 80 10 < th dose dependent rect. 17 8
774 160.67 atmosphere 1015 270 < th dose dependent rect. 4 16
800 160.74 wind 9 14400 > th dose independent rect. 13 1
801 160.74 humidity 80 14400 > th dose independent rect. 24 5
802 160.74 atmosphere 1000 10 > th dose independent rect. 20 21
806 160.76 humidity 80 14400 < th dose independent rect. 1 1
813 160.77 humidity 80 10 < th dose dependent rect. 17 12
823 160.80 wind 9 14400 < th dose independent rect. 13 1
849 160.84 humidity 80 14400 < th dose independent rect. 20 10
854 160.85 humidity 80 14400 > th dose independent rect. 4 1
859 160.86 humidity 80 14400 < th dose independent rect. 5 1
874 160.89 humidity 60 270 < th dose independent rect. 15 18
876 160.89 humidity 70 270 < th dose dependent rect. 15 17
879 160.90 humidity 80 14400 < th dose independent rect. 24 6
896 160.95 wind 3 43200 < th dose dependent rect. 21 3
900 160.96 temperature 25 270 < th dose independent rect. 9 19
956 161.06 atmosphere 1015 10 < th dose dependent rect. 7 15
977 161.11 atmosphere 1000 90 > th dose independent rect. 20 10
978 161.11 atmosphere 1000 10 > th dose independent rect. 22 19