BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0514500 Os05g0514500|Os05g0514500
         (406 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os05g0514500  Prefoldin domain containing protein                 590   e-169

>Os05g0514500 Prefoldin domain containing protein
          Length = 406

 Score =  590 bits (1521), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 312/406 (76%), Positives = 312/406 (76%)

Query: 1   MLQFQEELALGVKEEQGEEVDSLLVMMLVRTVKKPSKFEDSDTVTAKPARAVFEMPHRTS 60
           MLQFQEELALGVKEEQGEEVDSLLVMMLVRTVKKPSKFEDSDTVTAKPARAVFEMPHRTS
Sbjct: 1   MLQFQEELALGVKEEQGEEVDSLLVMMLVRTVKKPSKFEDSDTVTAKPARAVFEMPHRTS 60

Query: 61  PRXXXXXXXXXXXVSRVAELEAKLGKAEGQLAEMREQLXXXXXXXXXXXXXLVESKKRFS 120
           PR           VSRVAELEAKLGKAEGQLAEMREQL             LVESKKRFS
Sbjct: 61  PRAPKKPAGGGAAVSRVAELEAKLGKAEGQLAEMREQLAAAEKARKDARAALVESKKRFS 120

Query: 121 XXXXXXXXXXXXXXXXXXEQTPPQAVSDEKCGVISPAGDVPEAAEPGDAQGEETKEMADD 180
                             EQTPPQAVSDEKCGVISPAGDVPEAAEPGDAQGEETKEMADD
Sbjct: 121 AAKKRVATAGAASSSAAAEQTPPQAVSDEKCGVISPAGDVPEAAEPGDAQGEETKEMADD 180

Query: 181 DEVNSVTAAIVGDLEGNKGGQEVEQLRTKLMEKDMEVYELKAKLIAMDAEADDLRASLAT 240
           DEVNSVTAAIVGDLEGNKGGQEVEQLRTKLMEKDMEVYELKAKLIAMDAEADDLRASLAT
Sbjct: 181 DEVNSVTAAIVGDLEGNKGGQEVEQLRTKLMEKDMEVYELKAKLIAMDAEADDLRASLAT 240

Query: 241 KGMEIDELRAKLTSKDADIAAVEADNAELMKMAEEASHAVKETATKARDTEHXXXXXXXX 300
           KGMEIDELRAKLTSKDADIAAVEADNAELMKMAEEASHAVKETATKARDTEH        
Sbjct: 241 KGMEIDELRAKLTSKDADIAAVEADNAELMKMAEEASHAVKETATKARDTEHALRESAAR 300

Query: 301 XXXXXXXXXXXXXXXXXXXXXXXQRGRAQSEQWRKXXXXXXXXXXXXXXXXXXXXXDVEW 360
                                  QRGRAQSEQWRK                     DVEW
Sbjct: 301 EAARVAERLRASERAREALEAELQRGRAQSEQWRKAAEEAAAVLAAVEHGAGAPAADVEW 360

Query: 361 RRHSSGAAAGERVAKDTDEHHVSGGKRNSGGAMRMLSELWKKKAQK 406
           RRHSSGAAAGERVAKDTDEHHVSGGKRNSGGAMRMLSELWKKKAQK
Sbjct: 361 RRHSSGAAAGERVAKDTDEHHVSGGKRNSGGAMRMLSELWKKKAQK 406



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.307    0.123    0.330 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,266,033
Number of extensions: 366685
Number of successful extensions: 1506
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1498
Number of HSP's successfully gapped: 3
Length of query: 406
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 303
Effective length of database: 11,657,759
Effective search space: 3532300977
Effective search space used: 3532300977
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 157 (65.1 bits)