BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0512200 Os05g0512200|Os05g0512200
         (392 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os05g0512200  Conserved hypothetical protein                      644   0.0  

>Os05g0512200 Conserved hypothetical protein
          Length = 392

 Score =  644 bits (1662), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 331/380 (87%), Positives = 331/380 (87%)

Query: 13  PPQPLRPRRGIAVPSSYSHRAATRPRLAVXXXXXXXXXXXXXXXXXXXXXFYXXXXXXXX 72
           PPQPLRPRRGIAVPSSYSHRAATRPRLAV                     FY        
Sbjct: 13  PPQPLRPRRGIAVPSSYSHRAATRPRLAVSASSTTTGTTETTSERGGAERFYFNFTGFPF 72

Query: 73  XXXXXXXRRTIRTELLKELDAPVEHIVLPTFAYEHKVFFGPFTRKFPRAQIWVAPRQWSW 132
                  RRTIRTELLKELDAPVEHIVLPTFAYEHKVFFGPFTRKFPRAQIWVAPRQWSW
Sbjct: 73  PLGPFLNRRTIRTELLKELDAPVEHIVLPTFAYEHKVFFGPFTRKFPRAQIWVAPRQWSW 132

Query: 133 PINLPLEFFGIFRAKPLQDEDDDTPWAGEIEQKMLSSPEVGIGPYVEVAFYHKPSRTLLV 192
           PINLPLEFFGIFRAKPLQDEDDDTPWAGEIEQKMLSSPEVGIGPYVEVAFYHKPSRTLLV
Sbjct: 133 PINLPLEFFGIFRAKPLQDEDDDTPWAGEIEQKMLSSPEVGIGPYVEVAFYHKPSRTLLV 192

Query: 193 TDAVIFVPRQPPECISKESLLASAKNGLAVKILSKGKEVPDEPVVDNKLNRQKGWERMVL 252
           TDAVIFVPRQPPECISKESLLASAKNGLAVKILSKGKEVPDEPVVDNKLNRQKGWERMVL
Sbjct: 193 TDAVIFVPRQPPECISKESLLASAKNGLAVKILSKGKEVPDEPVVDNKLNRQKGWERMVL 252

Query: 253 QILFLGPSNLLEPNASFAQMSQKLIVSPIVKTLVFSKVPEKVRDWVDRIAADWPFRRIIP 312
           QILFLGPSNLLEPNASFAQMSQKLIVSPIVKTLVFSKVPEKVRDWVDRIAADWPFRRIIP
Sbjct: 253 QILFLGPSNLLEPNASFAQMSQKLIVSPIVKTLVFSKVPEKVRDWVDRIAADWPFRRIIP 312

Query: 313 AHFAAPINANRSXXXXXXXXXXXXXPERSPASPGLSLLFASLMGKAASYFPPDDMKTLSS 372
           AHFAAPINANRS             PERSPASPGLSLLFASLMGKAASYFPPDDMKTLSS
Sbjct: 313 AHFAAPINANRSDFLAAFAFLDEFLPERSPASPGLSLLFASLMGKAASYFPPDDMKTLSS 372

Query: 373 LDEFLVSVGAVKKTVSGRKR 392
           LDEFLVSVGAVKKTVSGRKR
Sbjct: 373 LDEFLVSVGAVKKTVSGRKR 392



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.321    0.137    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,034,720
Number of extensions: 470196
Number of successful extensions: 892
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 891
Number of HSP's successfully gapped: 1
Length of query: 392
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 289
Effective length of database: 11,657,759
Effective search space: 3369092351
Effective search space used: 3369092351
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 157 (65.1 bits)