Os05g0512200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os05g0512200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 223.95 | 0.703 | 9.57 | -0.42 | 4.42 | -2.05 | 1.67 | 6.74 | -0.373 | 8.35 | 25.61 | 11 | 16.1 | 6.88 |
| 251.45 | 0.739 | 9.63 | -1.25 | 4.26 | -1.83 | 0.666 | -- | -0.626 | 8.3 | 23.6 | 32 | 16.4 | 7.2 |
| 231.91 | 0.709 | 9.58 | -0.438 | 4.45 | -2.04 | -- | 6.03 | -0.388 | 8.35 | 25.62 | 12 | 16.1 | 6.83 |
| 251.33 | 0.738 | 9.66 | -1.12 | 4.17 | -1.87 | -- | -- | -0.657 | 8.28 | 23.69 | 26 | 16.5 | 7.22 |
| 806.89 | 1.32 | 9.6 | 0.509 | -- | -4.01 | -- | 6.38 | 0.288 | -- | 22.8 | 21 | 16.5 | 7.34 |
| 371.74 | 0.904 | 9.69 | -1.37 | 5.54 | -- | 0.92 | -- | -0.995 | 8.11 | -- | -- | -- | -- |
| 374.29 | 0.906 | 9.69 | -1.35 | 5.54 | -- | -- | -- | -0.996 | 8.1 | -- | -- | -- | -- |
| 611.91 | 1.15 | 9.84 | -1.16 | -- | -3.91 | -- | -- | -0.954 | -- | 19.8 | 82 | 15.6 | 9.58 |
| 284.44 | 0.786 | 9.65 | -- | 4.12 | -1.93 | -- | -- | -0.597 | 8.26 | 23.61 | 25 | 16.3 | 7.43 |
| 2056.19 | 2.12 | 9.83 | -1.3 | -- | -- | -- | -- | -0.929 | -- | -- | -- | -- | -- |
| 422.05 | 0.961 | 9.66 | -- | 5.53 | -- | -- | -- | -0.846 | 8.12 | -- | -- | -- | -- |
| 342.16 | 0.862 | 9.66 | -- | -- | -5.5 | -- | -- | -0.558 | -- | 18.94 | 478 | 11 | 10.3 |
| 2100.62 | 2.14 | 9.8 | -- | -- | -- | -- | -- | -0.785 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 236.05 | temperature | 25 | 10 | > th | dose independent | rect. | 16 | 7 |
| 3 | 238.01 | temperature | 20 | 10 | > th | dose dependent | rect. | 16 | 10 |
| 6 | 240.09 | temperature | 25 | 270 | > th | dose independent | rect. | 14 | 7 |
| 10 | 241.98 | temperature | 20 | 10 | > th | dose dependent | rect. | 16 | 7 |
| 25 | 247.55 | temperature | 20 | 270 | > th | dose dependent | rect. | 14 | 9 |
| 61 | 259.78 | temperature | 20 | 30 | > th | dose dependent | rect. | 16 | 14 |
| 92 | 264.62 | temperature | 30 | 270 | < th | dose dependent | rect. | 11 | 14 |
| 109 | 266.87 | temperature | 25 | 30 | > th | dose independent | rect. | 16 | 12 |
| 122 | 267.96 | temperature | 20 | 270 | > th | dose dependent | sin | 16 | NA |
| 141 | 269.25 | temperature | 30 | 270 | < th | dose dependent | sin | 18 | NA |
| 168 | 272.10 | radiation | 10 | 270 | > th | dose independent | rect. | 16 | 1 |
| 232 | 276.43 | temperature | 25 | 720 | > th | dose independent | rect. | 9 | 10 |
| 286 | 279.12 | temperature | 25 | 270 | < th | dose independent | rect. | 10 | 14 |
| 296 | 279.72 | temperature | 20 | 720 | > th | dose dependent | rect. | 7 | 12 |
| 297 | 279.74 | temperature | 25 | 270 | > th | dose independent | sin | 18 | NA |
| 322 | 280.37 | temperature | 20 | 720 | > th | dose dependent | rect. | 7 | 14 |
| 360 | 281.49 | temperature | 25 | 90 | > th | dose independent | rect. | 16 | 14 |
| 376 | 281.73 | temperature | 25 | 270 | < th | dose independent | sin | 18 | NA |
| 385 | 282.21 | temperature | 25 | 720 | > th | dose independent | rect. | 5 | 14 |
| 396 | 282.72 | temperature | 25 | 10 | < th | dose dependent | rect. | 12 | 15 |
| 417 | 283.26 | temperature | 30 | 720 | < th | dose dependent | rect. | 10 | 8 |
| 456 | 284.32 | temperature | 30 | 720 | < th | dose dependent | rect. | 11 | 4 |
| 515 | 285.88 | temperature | 25 | 720 | < th | dose independent | rect. | 9 | 11 |
| 522 | 285.98 | temperature | 30 | 720 | < th | dose dependent | sin | 22 | NA |
| 525 | 286.05 | temperature | 30 | 720 | < th | dose dependent | rect. | 8 | 14 |
| 530 | 286.11 | temperature | 25 | 720 | < th | dose independent | rect. | 8 | 13 |
| 533 | 286.20 | temperature | 25 | 720 | > th | dose independent | sin | 23 | NA |
| 536 | 286.22 | temperature | 10 | 720 | > th | dose dependent | rect. | 9 | 10 |
| 548 | 286.52 | temperature | 30 | 720 | < th | dose dependent | rect. | 9 | 11 |
| 552 | 286.67 | temperature | 10 | 720 | > th | dose dependent | rect. | 7 | 14 |
| 561 | 286.86 | temperature | 25 | 720 | > th | dose dependent | rect. | 2 | 17 |
| 569 | 286.94 | temperature | 20 | 720 | > th | dose dependent | sin | 22 | NA |
| 578 | 287.05 | temperature | 30 | 720 | < th | dose dependent | rect. | 6 | 16 |
| 592 | 287.34 | temperature | 20 | 30 | > th | dose dependent | rect. | 16 | 18 |
| 711 | 289.07 | temperature | 25 | 720 | < th | dose independent | sin | 22 | NA |
| 716 | 289.18 | temperature | 25 | 720 | < th | dose independent | rect. | 4 | 17 |
| 971 | 292.67 | temperature | 25 | 720 | > th | dose dependent | rect. | 13 | 23 |